Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1348 ATGAGACGACGTCGTTTTAGAACCAAGGAATTTTTATACCAAAATCAGTTCGGCTGTCATCGAGCGTGCAATCAGATGTTGGCGGCTCTAAGATCCCGCGCCCTACTCCATCACTCGTCTTCTTCTTCCTTCTCGAATCTTCAACAATGGAAGCTAGGGTTTCTAGGGTTGAAACGCACCTGGTCATCCTCCTATATTGAGAGCAACAAGGCAACAGAGTTGCTGAACTTGCAAGAGATAGAGCAGATTCTGAGCGATGTTAAAGCCGACGACATCAGAGTGATTCCGGTTCGCCAGCACTGTGATTTCATGGTTATCGCCACTGGTAGATCCTCCTGGCACGTCAAAAACATCGCTCAAGCCCTTATTTACAAGGCTAAGCAAAAACAGAAGGGAGCTCAGCGGATTTTGCTGCCCAGTGTAGAAGGGCAAGAGGGAGGGAAGTGGGTTATCATTGACTCTGGCACGGTAATAGTTCACGCTCTTGATGAGAAGGCTAGAGCGTATTACAATTTAGAAAGTCTTTGGACCACAGAAACATCTCCAAATGAACCAAGTAGTCAGGAATTGAAAAATGCTTTTGTGAAGATCCGCCGCAAGAATAACTCCAAAAAATCAGTGCAGACTAGTTCTTAA 636 0.456 MRRRRFRTKEFLYQNQFGCHRACNQMLAALRSRALLHHSSSSSFSNLQQWKLGFLGLKRTWSSSYIESNKATELLNLQEIEQILSDVKADDIRVIPVRQHCDFMVIATGRSSWHVKNIAQALIYKAKQKQKGAQRILLPSVEGQEGGKWVIIDSGTVIVHALDEKARAYYNLESLWTTETSPNEPSSQELKNAFVKIRRKNNSKKSVQTSS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1348 211 Pfam Ribosomal silencing factor during starvation 79 176 - -
Vvi1g1348 211 FunFam Mitochondrial assembly of ribosomal large subunit 1 75 189 - -
Vvi1g1348 211 Hamap Ribosomal silencing factor RsfS [rsfS]. 71 177 IPR004394 -
Vvi1g1348 211 PANTHER IOJAP SUPERFAMILY ORTHOLOG 31 189 IPR004394 -
Vvi1g1348 211 Gene3D Beta Polymerase, domain 2 73 200 IPR043519 -
Vvi1g1348 211 NCBIfam ribosome silencing factor 77 176 IPR004394 -
Vvi1g1348 211 SUPERFAMILY Nucleotidyltransferase 78 179 IPR043519 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1348 - - vvi:100249470 387.111