Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1327 ATGAGCAATGCCTATATCACTGGGTTTCGTACCATTCACCATAAAGCAGCATCGCCATTTCCTTCATGCAAGTTGCATGGAAATGGAATTCCATTTCCTTCATGCAAGTTGCATGGAAATGGAATTTTCAGAACCTTCTCCACATGCACCTCGCCGTTGAACTCCTCAACTCCCCCGCTCAGCATTCGATCCCCTTCATCACTTGTGTTGGCATCTTCCCAGATTGTCCCATCTAATCTGCCACAGCGCTCAGAAGAATGGTTTGCCCTGCGCAGGGACAAGCTGACAACAAGCACTTTCAGCACTGCACTGGGCTTTTGGAAAGGCAACCGTCGTCATGAACTCTGGCATGAGAAAGTATTTGCATCAGATGTACAATCCATAGAAGCCTCTAGAAATAGTGCCATGGAGTGGGGCATGCTCAATGAAGCAGCAGCTATAGAGCAGTACAAAAGCATCACAGGTCGTGATGTGAGCTTGTTAGGGTTCGCGATCCATTCAGAGGAGCAATTCAATTGGCTTGGTGCTTCCCCAGATGGTCTTCTTGGGTGCTTCCCAGGTGGTGGTATCCTAGAAGTGAAGTGCCCATACAACAAAGGGAAGCCTGAGATGGGTCTTCCCTGGTCTACTATGCCTTTCTATTACATGCCTCAGGTGCAGGGTCAAATGGAGATAATGGGTAGAGAATGGGTTGATCTGTATTGCTGGACACCAAATGGGAGCACAATATTCCATGTATGTAGAGACCGCAGTTACTGGGAGCTGATACATGGAATTTTACACGAGTTCTGGTGGGAAAGTGTGGTCCCTGCTAGGGAAGCTCTATTGCTGGGGAAGGAGGAGGAGGCCAGGTTGTATAAACCAGCATCAACACACAAACAGACAGGACTGGTGATTAGTAAGAGCATAAAGTTGGCTGCTGAGTCTAAATTGTCGTGCAGAGAGATTGCAAGTCATATCGAATTTTTCAGATGA 975 0.4738 MSNAYITGFRTIHHKAASPFPSCKLHGNGIPFPSCKLHGNGIFRTFSTCTSPLNSSTPPLSIRSPSSLVLASSQIVPSNLPQRSEEWFALRRDKLTTSTFSTALGFWKGNRRHELWHEKVFASDVQSIEASRNSAMEWGMLNEAAAIEQYKSITGRDVSLLGFAIHSEEQFNWLGASPDGLLGCFPGGGILEVKCPYNKGKPEMGLPWSTMPFYYMPQVQGQMEIMGREWVDLYCWTPNGSTIFHVCRDRSYWELIHGILHEFWWESVVPAREALLLGKEEEARLYKPASTHKQTGLVISKSIKLAAESKLSCREIASHIEFFR* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1327 324 Pfam YqaJ-like viral recombinase domain 86 228 IPR019080 -
Vvi1g1327 324 Gene3D - 64 271 IPR011604 -
Vvi1g1327 324 PANTHER EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN 53 321 - -
Vvi1g1327 324 SUPERFAMILY Restriction endonuclease-like 78 280 IPR011335 -
Vvi1g1327 324 CDD PDDEXK_lambda_exonuclease-like 82 264 - -
Vvi1g1327 324 NCBIfam putative phage-type endonuclease 80 237 IPR017482 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1327 Vvi-Chr1 19494496 19495470 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1327 - - vvi:100254469 667.922