Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1323 ATGGCGCCCAAGCCCAAGCCAAAGCCCACGGCTTCGTCGTCGTCACAGCCCCCACCTCCCATCGAAGACCTCTTCACGTCTCTCAACCTCCACATCCAGCGGTCCCAATTCGACCAGGCCGTCAAAGTCGCGGATCAGATTCTCTTGGTTGCGCCCTCCGATGAGGACGCGATTCGGTGCAAGGTTGTGGCCTTGATCAAAGAAGATAGAATTAATGACGCGTTATCGACTATTCAAGCTTCGCAGAGGCTTCCGATTGATCTCAGTTTCTTCAAGGCATACTGTTTGTACAGGCAAAACAAGTTAGATGAGTCGTTGGAATCCTTGAAAAGCCAAGAGGGAAGCTCCACAGCCATGTTGTTGGAGTCTCAGATTCTATATCGCTTAGGGAAAATGGATGCTTGTATTGATATTTATCAGAAGCTTCAGAAATCCAAGATCGAGTCGTTAGAGATAAACCTTGTTGCTGGTTTGGTGTCGGCTGGGAGAGGTTCTGATGTACAAGGAACGCTGGATGCCCTCAGAGTTAAAGCTACTAGCAGCTTTGAGTTGGCATACAACACTGCCTGTTCTTTGATAGAAAGGAGTAAGTACAAAGATGCTGAACAACTCTTGCTGTCAGCTCGAAGGGTTGGCCAGGAAACATTAATGGAAGACAATTTAGCTGATGATGAGATAGAGATTGAACTGGCTCCATTAGCTGTCCAGTTGGCATATGTTCAGCAGCTCCTTGGAAACACACCAGAGGCCATGGAAGCCTACACAGGCATTATTAACCGAAATCTGGCAGATGAATCATCACTTGCTGTGGCAGTAAATAACCTTGTTGCATTAAAGGGTCCAAAAGATATTTCTGATAGCCTAAGGAAACTCGATCGGCTAATGGAAAAAGGCAATGGAGCTCAGAGCTTTCAGCTTTCTAATGGACTGGAGTCCAAACTTTCACCAAAACAGAGGGAAACAATATACACTAATCGTGTGCTTCTACTACTACATGCAAATAGGATGGATCAGGCTCGAGAACTTGTTGCTGCACTGCCAGACATGTTTGCAGACAGTGTGATGCCAGTTCTGCTTCAGGCTGCTGTTTTGGTTAGAGAGAACAAGAGTGGAAAAGCTGAAGAAATATTAGGGCAGTTTGCTGAGAAGTTCCCCGATAAGGCCAAGGTGGTTCTCCTTGCAAGGGCACAGATTGCTGCTGTAGCCGGTCACCCTCAAATTGCGGCTGAGTCCCTTAGTAAAATAGCTGACATTCAGCACTTGCCTGCTACAGTTGCCACCATTGTATCCCTTAAAGAGCGTGCTGGGGATATTGATGGTGCAGAAGCTGTTTTTGATTCTGCAATCCAATGGTGGTCAAATGCCATGACAGAAGATAACAAGCTCACTGTTATAATGCAAGAGGCTGCTTCCTTCAAACTCAAGCATGGGCGGGAGAAGGAGGCTGCCCGGCTATATGAAGAGCTTGTTAAAAGCCATGGAAGTGTACAGGCTTTGATTGGGCTGGTAACTACGGCTGCTCGTGTGGATGTTGACAAGGCTGAAGCTTATGAAAAACAGCTAAAACCATTGCCAGGTTTGAAGGGAGTTGATGTGGAGAGCTTGGAGAGGACTTCCGGTGCCAAACACATTCAAAGTGATAGTCGTGTGGGTATCACTGAAGCATATGAAGAAAGTAAGAATAAGGAGAAGGCAAAGAAGAAAAGAAAGAGAAAGCCAAGGTACCCTAAAGGATTTGACCCTGCAAACCCAGGCCCTCCACCAGACCCGGAGCGGTGGCTACCCAAGAGGGAGAGGTCTAGTTACAGGCCCAAGAGAAAGGACAAGAGAGCAGCTCAGGTGAGAGGCTCACAGGGTGCGGTTGTTAGAGAAAAACATGAAGCTGCTGGTTCAGACACTTCTGCCAATACGTCAAATTCAAAATCAGACCAAGCCACCACCTCCAAAGGTTCCTCACAGAACGCGGTTGCGTCACAATCCAAGCCTTCATCCAAGTCATCAAAGAAGAAGTCTAGGAAATAA 2022 0.4708 MAPKPKPKPTASSSSQPPPPIEDLFTSLNLHIQRSQFDQAVKVADQILLVAPSDEDAIRCKVVALIKEDRINDALSTIQASQRLPIDLSFFKAYCLYRQNKLDESLESLKSQEGSSTAMLLESQILYRLGKMDACIDIYQKLQKSKIESLEINLVAGLVSAGRGSDVQGTLDALRVKATSSFELAYNTACSLIERSKYKDAEQLLLSARRVGQETLMEDNLADDEIEIELAPLAVQLAYVQQLLGNTPEAMEAYTGIINRNLADESSLAVAVNNLVALKGPKDISDSLRKLDRLMEKGNGAQSFQLSNGLESKLSPKQRETIYTNRVLLLLHANRMDQARELVAALPDMFADSVMPVLLQAAVLVRENKSGKAEEILGQFAEKFPDKAKVVLLARAQIAAVAGHPQIAAESLSKIADIQHLPATVATIVSLKERAGDIDGAEAVFDSAIQWWSNAMTEDNKLTVIMQEAASFKLKHGREKEAARLYEELVKSHGSVQALIGLVTTAARVDVDKAEAYEKQLKPLPGLKGVDVESLERTSGAKHIQSDSRVGITEAYEESKNKEKAKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPKRKDKRAAQVRGSQGAVVREKHEAAGSDTSANTSNSKSDQATTSKGSSQNAVASQSKPSSKSSKKKSRK* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1323 673 Gene3D Tetratricopeptide repeat domain 20 168 IPR011990 GO:0005515
Vvi1g1323 673 MobiDBLite consensus disorder prediction 536 673 - -
Vvi1g1323 673 MobiDBLite consensus disorder prediction 1 20 - -
Vvi1g1323 673 MobiDBLite consensus disorder prediction 631 664 - -
Vvi1g1323 673 SUPERFAMILY TPR-like 233 492 IPR011990 GO:0005515
Vvi1g1323 673 FunFam Signal recognition particle subunit SRP72 312 509 - -
Vvi1g1323 673 Pfam Putative TPR-like repeat 58 156 IPR031545 -
Vvi1g1323 673 FunFam Signal recognition particle subunit SRP72 20 167 - -
Vvi1g1323 673 Gene3D Tetratricopeptide repeat domain 313 498 IPR011990 GO:0005515
Vvi1g1323 673 SUPERFAMILY TPR-like 21 258 IPR011990 GO:0005515
Vvi1g1323 673 Pfam SRP72 RNA-binding domain 547 604 IPR013699 GO:0006614|GO:0008312|GO:0048500
Vvi1g1323 673 PIRSF SRP72 11 673 IPR026270 GO:0006614
Vvi1g1323 673 MobiDBLite consensus disorder prediction 1 16 - -
Vvi1g1323 673 PANTHER SIGNAL RECOGNITION PARTICLE 72 15 673 IPR026270 GO:0006614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1323 K03108 - vvi:100244217 1178.31