Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1322 ATGAGTGATGAAAGTACTTTTCTCCTCTTCAGTGAGACTGAGCTAGCTGGGTTACCACCGGAGTTCCTTCAGAGCCTAGACAAAGCTGAGAATGGTAAATTTAAGGTTTACTTGAGAAGTCGTCATGTTATTCCAGTATTGGAGCTTTGTAAGATAGGGATGACCAGGAAGACAGTAGCTGTGGCATATGGGAAGAGGGGTGGAGAAGCAAATCCTTCTGTCTTGAAAAGTCTGATTCAACTGCGCCATAAATTGGCTCGATTGCTCAGCTATTCAAATTATGCAGACTATGCTGTTGCTCCCAGAATGGCAAAGTCATCCTCAAAGGTATTTGAGTTTTTAGAGGACATCTCTGCCAGTGTAAATGAATTAGCTGCCAGAGAGCTTGACATGTTGAAAGACTTAAAGCGGAAAGAGGAAGGAGAGTTTCCATTTGGAAATGAGGATCTACTGTACTATATGAAGAGGGTTGAAGAGCAATATCTTGACCTTGACTTTGGCGTACTTAAGCAATACTTTCCCATCAATTTGGTTTTACCTGGGATCTTCAAAATATTCCAAGACCTTTTTGGTTTAAGATTTGAGGAAATTGCTGATGTTGAAGTTTGGCACTCTGATGTTCGTGCTTTTTCTGTTTTTGACTTAAGTTCTAGTGAGCTCTTGGGTTATTTCTACCTTGATATTCACCCCAGGGAAGGAAAATATGGTCACATCTGCGTTGTAGCTCTGCAAAATGGTTCATTATCATCCAATGGTGCTCGACAGATACCAGTAGCATTGCTTATTTCGCAATGTCAGAAGGAAGTTGATGATCATCCTGGCCTATTGCGTTTCTCCGAAGTGGTTAATCTTTTCCATGAGTTTGGTCATGTGGTCCAACATATCTGCAATCGTGCATCATTTGCTAGATTTTCTGGGCTACGTGTTGATCCTGACTTTGTGGAGATCCCTGCTCGGGTGTTTGAAAACTGGTGTTATGAAAGCTTCTCACTGAAATTGATATCTGGTTTCCATCAGGATATCACGAAGCCCATTGAGGATAGAATGTGCGAATCACTTAAAAGATGGAGATCTTCCTTTTCAGCACTTAAATTGAAGCAAGAAATTCTTTATTGTCTTTTCGATCAGATTATACATTCAACTGAAGATGTTGACATGGTCAAGCTATTCAGGGATCTGCATCCAAAGGTCATGTTAGGATTGCCAATGTTGGAAGGAACCAATCCAGCATCATGTTTTCCACGTAGTGCTGTTGGTTTTGAGGCTACTTGCTACAGTCGCATTTGGAGTGAGGTTTTTGCAGCTGATATGTTTGCCTCAAAGTTCCCTGGCGGTCTTCTGAGCCAGTATATTGGCATGCAGTTCAGGAAAAAGGTATTGGCCTTGGGGGGATCGAAAGACCCCATTGACATTCTATCAGATTTCCTTGGGAGAGAACCTTCAATTCAAGCTTTTGTAGAGAGCAAAGTCCAAGCTAGTTTGTGA 1485 0.4168 MSDESTFLLFSETELAGLPPEFLQSLDKAENGKFKVYLRSRHVIPVLELCKIGMTRKTVAVAYGKRGGEANPSVLKSLIQLRHKLARLLSYSNYADYAVAPRMAKSSSKVFEFLEDISASVNELAARELDMLKDLKRKEEGEFPFGNEDLLYYMKRVEEQYLDLDFGVLKQYFPINLVLPGIFKIFQDLFGLRFEEIADVEVWHSDVRAFSVFDLSSSELLGYFYLDIHPREGKYGHICVVALQNGSLSSNGARQIPVALLISQCQKEVDDHPGLLRFSEVVNLFHEFGHVVQHICNRASFARFSGLRVDPDFVEIPARVFENWCYESFSLKLISGFHQDITKPIEDRMCESLKRWRSSFSALKLKQEILYCLFDQIIHSTEDVDMVKLFRDLHPKVMLGLPMLEGTNPASCFPRSAVGFEATCYSRIWSEVFAADMFASKFPGGLLSQYIGMQFRKKVLALGGSKDPIDILSDFLGREPSIQAFVESKVQASL* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1322 494 Gene3D Neurolysin, domain 3 3 486 IPR024077 -
Vvi1g1322 494 Gene3D Collagenase (Catalytic Domain) 174 324 IPR024079 GO:0008237
Vvi1g1322 494 CDD M3A_TOP 1 489 - -
Vvi1g1322 494 Coils Coil 122 142 - -
Vvi1g1322 494 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 3 487 - -
Vvi1g1322 494 FunFam Probable thimet oligopeptidase 174 324 - -
Vvi1g1322 494 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 3 489 IPR045090 GO:0004222|GO:0006508
Vvi1g1322 494 Pfam Peptidase family M3 49 488 IPR001567 GO:0004222|GO:0006508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1322 K01392 - vvi:100251085 986.867