Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1321 ATGATCAAACAGATATTTAGTAAGCTTCCTCGGAAGTTGTCTAAGGCAGTTGAAAATCGTGAGCTTGGTGGGACGACTGCATTCTCGAATAATTCTAATAGATCAAGAGGCAGTGATGTGGAGAGCAACCAGTTTGCAAATCTGAATGTTACATCTCTTGCAGCCTCTAATTCTACTCCAATTACCGGGAATAATCTTGGGAGCAAAATTCCCCAAGGTGGTAATTCGAAGGTCAATGGGAATTATATGACTCCTAACACTTACGAAGCATTGCCGGCCTTCAGGGATGTCCCCAGTTCCGAGAAACAGAATTTGTTCATTGGAAAGCTGAACTTGTGTTGTGTCGTGTTTGACTTCACGGACCCAACAAAGAACATCAAAGAAAAGGAGATCAAGCGTCAGACATTATTAGAGCTTGTGGATTATGTTACTTCTGCATCTGGGAAATTCACAGAAACGGTCATGCTAGAATGTGTAAAAATGGTGTCTGCAAATTTATTTAGGGCATTCACTACTCAGTCATGTGAGACCAAAGCTTCAGAAGGCTTTGATTTGGAAGAGGAGGAGCCGTCGATTGATCCTGCTTGGCCTCACTTGCAAATTGTGTATGAGTTTCTCCTAAGGTTTGTGGCATCACCTGAGAGTGATGCCAAGTTGGCTAAGAGGTACATTGATCACTCATTTGTTCTTAAGTTGTTGGATCTATTTGACTCTGAAGACCCCAGAGAAAGGGAATACCTAAAAACAATTCTTCATCGTGTCTATGGCAAATTTATGGTACACCGCCCATTCATCAGGAAGGCTATCAACAACATATTCTATCGTTTTATTTTTGAGACTGAAAAGCATAATGGCATAGCTGAACTTTTAGAAATTTTGGGCAGCATAATAAATGGGTTTGCTCTGCCACTGAAAGAAGAACACAAACTGTTCCTTGTCCGGGCACTGATTCCCTTGCACAAACCAAAGTGCTTACCAATGTATCATCAACAGCTGTCTTATTGTATTAGTCAGTTTGTGGAGAAAGACTGCAAGCTTGCTGATACAGTTATAAGGGGTTTATTAAAATATTGGCCAATCACAAACAGTTCAAAGGAAGTCATGTTCCTAAGCGAGTTAGAAGAAATTTTAGAAGCAACCCAGCCAGCAGAATTCCAGCGCTGTATGGTGCCCTTGTTTCACCAAATTGCTCGTTGCTTGAACAGCTCACACTTCCAGGTGGCAGAGAGAGCTTTGTTCCTATGGAATAATGGTCACATTGAGAACTTAATCAAACAAAATCGCGGTATTATATTGCCCATCATCTTCCCTGCCTTGGAGAAAAATGCTAGAAACCATTGGAATCAGGCTGTCCATGGCTTGACTTTAAATGTCCGCAAGATTTTCTTTGATCTTGATCCTGAGCTGTACAAGGAATGCTTGCTCAAGTTCCAGGAAGACGAATCAAAGGAAGATGAAATTAAAGCCAAACGGGAAGCCGCATGGAAACTTCTAGAAGAAATGGCTGCAAAGAGAGTTGCAAGTAATGAAGCTGTGCTTGTCCCCTGA 1548 0.416 MIKQIFSKLPRKLSKAVENRELGGTTAFSNNSNRSRGSDVESNQFANLNVTSLAASNSTPITGNNLGSKIPQGGNSKVNGNYMTPNTYEALPAFRDVPSSEKQNLFIGKLNLCCVVFDFTDPTKNIKEKEIKRQTLLELVDYVTSASGKFTETVMLECVKMVSANLFRAFTTQSCETKASEGFDLEEEEPSIDPAWPHLQIVYEFLLRFVASPESDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRVYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCLPMYHQQLSYCISQFVEKDCKLADTVIRGLLKYWPITNSSKEVMFLSELEEILEATQPAEFQRCMVPLFHQIARCLNSSHFQVAERALFLWNNGHIENLIKQNRGIILPIIFPALEKNARNHWNQAVHGLTLNVRKIFFDLDPELYKECLLKFQEDESKEDEIKAKREAAWKLLEEMAAKRVASNEAVLVP* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1321 515 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 91 502 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vvi1g1321 515 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 98 501 - -
Vvi1g1321 515 PIRSF PP2A_B56 4 513 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vvi1g1321 515 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 506 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vvi1g1321 515 SUPERFAMILY ARM repeat 103 484 IPR016024 -
Vvi1g1321 515 Gene3D - 98 501 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1321 Vvi-Chr1 19401890 19415232 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1321 K11584 - vvi:100245943 1032.71