Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1302 ATGATTTCTCAAATGGCTGCTGCAATTCCAAGAGGGAAGGGTGGTGCTCGACTTCAAATGAAATTAGCGTACAATCCCTTGGCGCCAGTCTTTTTGTTTTTGCTCCAGTGGATGGATTGTTCATGCACGTGCCTACTCCCCAAGTATCTCGATCTCTTCCACATACTCATTTACAAGGTATACACAGATGGGAGGCCGAATATATCTGCACATGGAAGGAAGGCAACTATTAGGGACTTCTATGCTGTCATATTACCTTCTCTTCAACGTATCCATGGTAACATAATGGAGCTGGATAATGATGAAGATGGCCATCCTGAAATAGAGATGTACGGCAAGAAAAGAACAGAAGAAGATGGCAGGCTTTCCAATATGGATTTGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGGAACACAAGATCAGAGTCCTGCCCCTTTTGTCGTGGCAGCATAAAGAGAGTTAATTCAGAAGACTTATGGGTTCTCACTTGTGGTGACGATGTGGTCAACACAGAAACAGTTTGCAGGGAAGATTTATTGCGCTTCTACCTCTATATCCACCACCTCCCAAAACACTACCCGGATGCTCTTTTCTTAGTGTATTATGAATACTTAATATGA 690 0.4304 MISQMAAAIPRGKGGARLQMKLAYNPLAPVFLFLLQWMDCSCTCLLPKYLDLFHILIYKVYTDGRPNISAHGRKATIRDFYAVILPSLQRIHGNIMELDNDEDGHPEIEMYGKKRTEEDGRLSNMDLKREDECGICLEPCTKMVLPNCCHAMCINCYRDWNTRSESCPFCRGSIKRVNSEDLWVLTCGDDVVNTETVCREDLLRFYLYIHHLPKHYPDALFLVYYEYLI* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1302 229 ProSiteProfiles Zinc finger RING-type profile. 133 171 IPR001841 -
Vvi1g1302 229 Pfam Zinc finger, C3HC4 type (RING finger) 130 177 - -
Vvi1g1302 229 PANTHER RING FINGER PROTEIN 41, 151 6 227 - -
Vvi1g1302 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 182 IPR013083 -
Vvi1g1302 229 SUPERFAMILY RING/U-box 125 176 - -
Vvi1g1302 229 FunFam RING/U-box superfamily protein 113 180 - -
Vvi1g1302 229 ProSitePatterns Zinc finger RING-type signature. 148 157 IPR017907 -
Vvi1g1302 229 SMART ring_2 133 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1302 Vvi-Chr1 19181762 19183289 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1302 - - vvi:100240870 484.182