Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1301 ATGAATCACCTAGCATGTAAGGGTCAGCTGGAGAATTCACTCTTCTGGGTTGGTGAGCTGGGCATGTATGACTATTCTCGTACTTATGGATCTTCTGTTTCCATCAAGTGGCTCATAGATTTATCAGTTAGTAGTACCTGCAGGCTTGTGAAGGCATTGTTGGACAGGGGTGCAAAGTACATTGTGGTTCAAAGCCTTCCACCGACTGGGTGCCTCCCCTTTGACATTTCATTATCCCCAGTAAGTGATCACGATAATCTTGGGTGTGCTGATACTGCAAACACGGTCACACAAACCCACAATGAACTCCTTCAGGCCAAGTTGGCAGAACAACAGAAGCAGTACCCTGACAGCATTATTGCATATGCTGATATTTGGAATGCATACTACACGGTACTGAAAAATCCCAGTCAGTTCGGATTTTCAGAGCCTTTCAAGGCATGCTGTGGATGTGGGAAAGGAGACCTCAACTTTGACTTGCGTTCGTTGTGTGGTGCACGCAACACAAGAGTCTGCAGTGACCCCAGCAAGCACATCACCTGGGATGGGGTTCACCTCACAGAAGCCATGCATCATGTTTTAGCTGATCTCTTGTTAAATAAAGGTTACTGTAAACCATCATTCGATCAGCTAGTTAAGAAGAAAAGAAGTTGCACAGCTAACTAG 666 0.455 MNHLACKGQLENSLFWVGELGMYDYSRTYGSSVSIKWLIDLSVSSTCRLVKALLDRGAKYIVVQSLPPTGCLPFDISLSPVSDHDNLGCADTANTVTQTHNELLQAKLAEQQKQYPDSIIAYADIWNAYYTVLKNPSQFGFSEPFKACCGCGKGDLNFDLRSLCGARNTRVCSDPSKHITWDGVHLTEAMHHVLADLLLNKGYCKPSFDQLVKKKRSCTAN* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1301 221 Pfam GDSL-like Lipase/Acylhydrolase 39 197 IPR001087 GO:0016788
Vvi1g1301 221 SUPERFAMILY SGNH hydrolase 19 200 - -
Vvi1g1301 221 Gene3D SGNH hydrolase 1 202 IPR036514 -
Vvi1g1301 221 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 7 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1301 Vvi-Chr1 19179040 19180059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1301 5 200 Acyl Lipid Metabolism Gene Families AT4G10950 27.586 4.70e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1301 - - vvi:100263223 461.07