Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1300 ATGTCTGGAGAATATGATTCAGAGCAACCGACTGTAGCGTTGGATTCAGTGGATATTGGAAGCTTAGACGTGGTGGGTGTTGATTCAGATGGGATGTCCGTACAATATTCTGAATCACAGCATGATTCGGCCGCCCAAGTCCCCGTTGACATGGGTGATTCAGCTAATGAGGGATCCGAATCTCCGGTGCGGGTGGATTACGTTGACCAAGATGATGATGATGGGGTGTTGGTGAAATTAGATGATGCGGGAAAGGAGGACATGTTTGTTGATGCTCCTGAGGAGTTAACCGCTTATGATGGGAGGAATGTTGATGGAGGGAGATCAGTCCAAGAGTATTCCGATGAAGAGCACATTGCACAGGATGGTCGGCTTCTTGAACTGGGCAATTTGGGGAAAACTGTGGATGAGACAGGAAGTGTTCCACGAGAATATGAGGAAGAAAGAGAGATGTTGGGGAAAGAACTTGCTAGTCTTCACCACCAGCTCAAGGCTCTGACAGTTCAGCTGCAATTGCCGGGTGGAAATGATGGTGGGTTGGTTGATTTTCTTCATACATCAGAAAGGGGAGGAATTGAGGATAATAAACCAGTGTTTGATACCCCCTTAAGTGAGATGATAAATGAGTGCTCTATGTTTGTTAGAGGTGCTTTGGAAGAACGGTTACAGACAGAAGGCACAATTAGAGAACTCCATGCAATTCTAGTTATGAAGGATCAAGAGATTGAGGATCTCAACAGAAAGGTCAATGAACTTTCTGTATCACACGATGTTGCTTCTCAGGTTGAACTTGAAAAGAACCAGCACATTGAGGGTGCCACAAACAGGATGTTTGCGTCTCTTGGCTCAGTTGTTGATCAAGAAGAATTGTGGGATGATTCAGTTAGTGGAAAAATAACTCATGTTGAGAAAAGTACCACCCAACTAATTGAGAAATATAGCCAGTTCCTTTCTGAAATTGATCTACTTAGGCAGCTTTTGACTGAGACTGGCTCTGATATCAGGGTGCAAGAGGGTTCTGGGACAATTTTTTTTGCTGTCCGGGCTGAGTTGCTAGAGCTCAAAAGAAAGGAAGCAGACTTTGTTGAGAAACTAAACCACTTAGAGGGGGAAAATAGAAAACTGGTTGGACAGCTTGAGAATGACAAAGTGACAGCAGAGATGCTGAGTACAGAACTTGGAAAAACAAAAATGGAGCTTGAGCAGGAAAAGAATAAATGTGCTAATGCCAAAGAGAAGCTTAGCTTGGCTGTGACAAAAGGGAAGGCATTGGTTCAACAACGTGATGCACTGAGACAGTCTCTTGCTGATAAAACTAGTGAGCTTGAGAAATGTTTAGTTGATTTGCAAAATAAGTCAAGTGCCTTAGAGGCTGCTGAACTGAGCAAGGAGGAGTTGGCCAAAAGTGAAAGTCTGGCATCTTCTCTTCAGCAAGAACTTTCATGGAAGAATGCAATTGTGGAGAAGTTTGAAGAAGTCCTGTCTGGGACCAGTAGAAATGAGGAGCTTCAATCAACGGATATCTTAGAGAAACTTGGATGGCTCATGGATGAGAGAAATGTACTGAAGACTGTTTCCTTGGAATTCCACAAATTGAGGGATGCCTTATCTTTGATTGATCTACCAGAAACTATTTCATCTTCAGACTTGGAATCTCAAGTCCGTTGGCTTGGGGAATCATTTTACCAGGCCAGAGATGAAATAAATAAATTACAAGACGAAATTTCTAGGACTAGGGAAGCAGCACAAAATGAGGTTGACCAGTTGACCACATCCCTTTTGGCAGAGATACAGGAAAAAGATTATCTTCAAAAGGAATTGGAAGATCTAACATTCAGTCATGAAAAAATTACTGAACGAGAGCAGCAAATTTCATCAGAGAAACATCACATGGTGAGGGCATTGCTGGATGCTTCTGGAATTACAATGGACAATGAAGAAGGGATCCATGAGCCTTCTTCTGATGTGACCATGCTCATAGACAGATGCTTGGGGAAGATAAAAGAACAAAGTGAGATCTCCGTTGAATCTGCTCGCGCTGATGAAGAAATGTTTGAAAGAATTCGAAGTCTCTTATATGTAAGAGATCAGGAGTTGACGCTTTGTAAGGAAATATTAGAAGAAGAGATGCCGATGAGGTTGGAAGTGAGTAATTTGACGGATAAGTTAAGAATGGTATCCCAAGAACTTGTAGCACTGAAAGCTGAAAAGAGTTCTTTGCAGAAAGATCTGGATCGATCTGAGGAGAAATTAGCTCTACTGAGGGAAAAGTTATCCTTGGCAGTTAAGAAAGGCAAGGGACTGGTTCAAGAACGGGAAAACTTGAAACAACTTCTGGATGAAAAGAATAAGGAAATTGAGAAGTTAAAGCTGGAGTTGCAGCAACAAGAGTCTGCATTTGGTGACTACAGGGGTCAGATTGATAAATTATCTGCTGATGTGGAACGCATTCCAAAGTTGGAGGCTGATCTTTTTGCTTTAAAAGACCGAAGGGAACAAGAGCAGGAAAGCTTGAAATTTCTTTTGGATGAAAAGAATAATGAAATTGAAAAGTTAAAGCTTGATTTGCAGCAGCTGGAGTCTGCATTTGGTGACCACAGGGATCAAGTTGATAGATTGTCCACTGATCTGGAACGCATCCCAGGATTGGAGGCTGATGTTGTGGCTATAAAAGATCAGAGGGATCAATTGGAGCAGTTCTTAGTGGAGAGCAATAACATATTACAGAGAGTAATCGAGTCTATCGATGGTATTGTTGTGCCCGGTGGTTTAGTTTTTGAAGAACCTGTAGCGAAGGTGAAATGGCTTGCAGCTTACTTTAGTGAATGTGAAGTTGCTAAGACACATGCAGAGCAAGAGCTGGAGAAAGTGAGAGAGGAAACCAGTACTCTTTCCAGCAAGTTAGCTGAAGCCTACACAACTATAAAATCACAGGAAGATGCTTTGTTAGTTGCAGAAGAAAACATTTCTAGGCTTGCTGAAGACAAGAAGGAAATTGAAGTTGGTAAGACGAATGTTGAACAAGAGTTACAGAAAGCAGTAGAGGAAGCTGCTTTCCAGGCTAGCAAGTTTGCTGAGGTTTGTTCCGCCCATACCTCCCTTGAAGATGCGTTAGCGATTGCAGAAAAGAATCTTTCTGCTGTAATGAATGAGAAAGAGGATGCTCAAGCTACTAGAGCTGCTGCTGAGACAGAACTAGAGAAAGTGAAACAGGAAGTTGCTTTTCAGTCCAACAGAGTGGAAGAGGCCTATGCAACTATAAAATCAATTGAAGGTGCACTTGCCCATGCTGAAGCCAATGCAGCTTTGCTAGCAGAAGAAATGAATGCTGCACAAGTTGATAGAGCCAATTTGGTTGATGAGCTAAGAAAGGTCAAAGAGGAAGCTGCTTCCCAGGCTATAGAGCTGGCAGATGTGTATACCACTGTAAAGTCATTGGAAGGCACCTTATCGAAGGCAGAGAATAGTATTGCTGAACTTGTTGATGGGAAAAAGGTGGTTGAACAGGAGAATTTAGTGCTTAATTCCAGGTTAAATGCATGTATGGAAGAGTTGGCTGGAACACATGGCAGCTTAGAAAGCAGGTCTGTGGAGCTCTTTGGTCACCTTAATGATCTTCAGATGCTTTTGAAGGATGAAACTCTATTATCCTCACTGAAACAAACCTTTGAGAAAAAATTTGAGAGCCTGAAAGACATGGACTCTGTTCTCAAGAACATAAGGGAACTTCTTATTGAGAAGGTTTCTGAACAATTGGGAAATAATCCTTTTGTGGAGGAAGATTCCTCTGCTTCAAAGCGTTTCTCAGATGGCCTTGATGGTATTGTGAATGTTGGAATGGCTAATGATGAGGCAAATCCTGCGGATGGCAATGATATCTCTTCATATTTTAGAAAGACAGTGGATGCATTCCATTCTAGAAACACAATTCTTGCAGATAAGATTGAAGGCTTCTCCACTTCTATGGATGGATTTATTGCAGTTCTTTTGCAGAAGTTACAGGCAACGAGGGATGAAGTAATAGTTGTGCTTGACCACGTGGAATCACTGAAACAGAAAATGAAGAATATGGAAATCCAAAAACAGGCCCAAGAGAATACAGTGACCATGTTAGAAAATGATATTGGGATTTTACTCTCTGCTTGTACTGATGCTAATCAAGAATTACAGCTTGAATTTGAGAACAATCTACCAAAACTGAGCTCTGTCCCTGAGTTGGAAAGTTCTAATTGGAGCCAGCTCACATTTATGGGAGAAAGAGATGCAGCAGAGCATCAACAAAGGATTGATAGCAGTAAATATGCAAAGACAGCAGAACAGTTGTCAGTTGCTACTAGAAAAGTTCAAACTCTGATTCAAATGTTTGAGAATGCAAGGAATGTGTCAGCCACCACCATTAAAGATTTGCAAAATGAATTGGATGAAATGAGAACAACTTCTGAAAAAGCCATAGAAGAGAGGGATATAAACCAAAAAAGAGTTTCCAAGTTGGAGGCTGATGCAGAAGCATTACAAAACCAATGCAACGACATGAAGCTTAGACTAGAGGATTATCAGGAAATAGAGGAGAAATTGAAGGCAAGAGAAGCAGAATTTTCATCATTCTCCAATCAGGTTTTGATGAAAGAACGAGAGGTAGAAGGTTCTCTCCTGTCAGCATCCCAAGTGAAGGCTCTCTTTGACAAGATAGATGAGATTAAAATCCCTTTTGCAGAGTCAGAAGCAGAAGAATTGGAGCCCCCAAATGCAGTTTATGTAAAGAAGCTGTTTCATGTAATTGACTGTGTTACTGAGTTGCAGCATCAGATGAATTTATTGTCTCATGAAAAAGAAGAGCTGCAGTCAACACTTGCGACACAGGTTTTTGAAATGGAACATCTGAGGAATGATAAGCAGGACTCAGAAAAGTTGAAAAATGATTTGTATGAACTGGAATTAAGTCTGGAGAAAATCATCCAGAAGTTGGGGGGTAATGATTTAGTTGGAGACAAGAAATCTGCTGGAGTGATGGAACTATTGACGGTATTAGAAAAGCTGGCTATGGATATAATCCTGGAATCTGAAAATTCAAAATCCAAAGCCCAGGAACTTGGTGCCAAGTTGCTTGGGGGTCAAAAGGTTGTGGATGAATTATCAACCAAGGTCAAATTACTTGAAGATTCAATTCATGCTAGGGCATCTCCACCAGAGGCAGTCCAGGAAAGGGGCATCTTTGAAGCACCCTCAGTGCCGTCTGGATCAGAAATATCTGAAATTGAAGATGTGGGACCACTTGGGACGAATACAGTATCACCTGTCCCATCAGCTGCTCACGTGAGAACTCTGCGGAAGGGATCAACTGACCACCTTGCACTAAATATTGATTCAGAATCTGATCATTTAATCAAGGAAGAAACAGATGAAGATAAAGGTCATGTATTCAAGTCTCTTAACACATCAGGGTTCATCCCGAAACAAGGAAAGATGATTGCAGATCGAATTGATGGAATTTGGGTATCTGGTGGCCGAATTCTGATGAGTCGTCCAAGAGCAAGGCTAGGCCTCATTGCCTATTGGCTCTTCTTGCACATATGGCTTCTGGGCACCATTTTGTAA 5595 0.4163 MSGEYDSEQPTVALDSVDIGSLDVVGVDSDGMSVQYSESQHDSAAQVPVDMGDSANEGSESPVRVDYVDQDDDDGVLVKLDDAGKEDMFVDAPEELTAYDGRNVDGGRSVQEYSDEEHIAQDGRLLELGNLGKTVDETGSVPREYEEEREMLGKELASLHHQLKALTVQLQLPGGNDGGLVDFLHTSERGGIEDNKPVFDTPLSEMINECSMFVRGALEERLQTEGTIRELHAILVMKDQEIEDLNRKVNELSVSHDVASQVELEKNQHIEGATNRMFASLGSVVDQEELWDDSVSGKITHVEKSTTQLIEKYSQFLSEIDLLRQLLTETGSDIRVQEGSGTIFFAVRAELLELKRKEADFVEKLNHLEGENRKLVGQLENDKVTAEMLSTELGKTKMELEQEKNKCANAKEKLSLAVTKGKALVQQRDALRQSLADKTSELEKCLVDLQNKSSALEAAELSKEELAKSESLASSLQQELSWKNAIVEKFEEVLSGTSRNEELQSTDILEKLGWLMDERNVLKTVSLEFHKLRDALSLIDLPETISSSDLESQVRWLGESFYQARDEINKLQDEISRTREAAQNEVDQLTTSLLAEIQEKDYLQKELEDLTFSHEKITEREQQISSEKHHMVRALLDASGITMDNEEGIHEPSSDVTMLIDRCLGKIKEQSEISVESARADEEMFERIRSLLYVRDQELTLCKEILEEEMPMRLEVSNLTDKLRMVSQELVALKAEKSSLQKDLDRSEEKLALLREKLSLAVKKGKGLVQERENLKQLLDEKNKEIEKLKLELQQQESAFGDYRGQIDKLSADVERIPKLEADLFALKDRREQEQESLKFLLDEKNNEIEKLKLDLQQLESAFGDHRDQVDRLSTDLERIPGLEADVVAIKDQRDQLEQFLVESNNILQRVIESIDGIVVPGGLVFEEPVAKVKWLAAYFSECEVAKTHAEQELEKVREETSTLSSKLAEAYTTIKSQEDALLVAEENISRLAEDKKEIEVGKTNVEQELQKAVEEAAFQASKFAEVCSAHTSLEDALAIAEKNLSAVMNEKEDAQATRAAAETELEKVKQEVAFQSNRVEEAYATIKSIEGALAHAEANAALLAEEMNAAQVDRANLVDELRKVKEEAASQAIELADVYTTVKSLEGTLSKAENSIAELVDGKKVVEQENLVLNSRLNACMEELAGTHGSLESRSVELFGHLNDLQMLLKDETLLSSLKQTFEKKFESLKDMDSVLKNIRELLIEKVSEQLGNNPFVEEDSSASKRFSDGLDGIVNVGMANDEANPADGNDISSYFRKTVDAFHSRNTILADKIEGFSTSMDGFIAVLLQKLQATRDEVIVVLDHVESLKQKMKNMEIQKQAQENTVTMLENDIGILLSACTDANQELQLEFENNLPKLSSVPELESSNWSQLTFMGERDAAEHQQRIDSSKYAKTAEQLSVATRKVQTLIQMFENARNVSATTIKDLQNELDEMRTTSEKAIEERDINQKRVSKLEADAEALQNQCNDMKLRLEDYQEIEEKLKAREAEFSSFSNQVLMKEREVEGSLLSASQVKALFDKIDEIKIPFAESEAEELEPPNAVYVKKLFHVIDCVTELQHQMNLLSHEKEELQSTLATQVFEMEHLRNDKQDSEKLKNDLYELELSLEKIIQKLGGNDLVGDKKSAGVMELLTVLEKLAMDIILESENSKSKAQELGAKLLGGQKVVDELSTKVKLLEDSIHARASPPEAVQERGIFEAPSVPSGSEISEIEDVGPLGTNTVSPVPSAAHVRTLRKGSTDHLALNIDSESDHLIKEETDEDKGHVFKSLNTSGFIPKQGKMIADRIDGIWVSGGRILMSRPRARLGLIAYWLFLHIWLLGTIL* 1865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1300 1864 Coils Coil 1347 1374 - -
Vvi1g1300 1864 Coils Coil 561 599 - -
Vvi1g1300 1864 Coils Coil 351 371 - -
Vvi1g1300 1864 Coils Coil 386 420 - -
Vvi1g1300 1864 Coils Coil 824 876 - -
Vvi1g1300 1864 Coils Coil 1596 1616 - -
Vvi1g1300 1864 PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 158 833 1818 - -
Vvi1g1300 1864 Coils Coil 1624 1654 - -
Vvi1g1300 1864 Coils Coil 1031 1135 - -
Vvi1g1300 1864 Coils Coil 1150 1170 - -
Vvi1g1300 1864 Coils Coil 449 479 - -
Vvi1g1300 1864 MobiDBLite consensus disorder prediction 34 67 - -
Vvi1g1300 1864 Coils Coil 975 1016 - -
Vvi1g1300 1864 Coils Coil 1466 1538 - -
Vvi1g1300 1864 Coils Coil 228 255 - -
Vvi1g1300 1864 Coils Coil 940 967 - -
Vvi1g1300 1864 Coils Coil 716 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1300 Vvi-Chr1 19163776 19171811 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1300 - - vvi:100257864 3429.8