Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1271 ATGAAGTCTGCTGGAGTTGTTCCGAATTCGGAGTCTTATTATAGGATAATGGAAGCTTACATTAAAATTCGAGATTATGAGAAAGTTGTCACATTGTTTCAAGAATTTGAAAGTAGGAAGATCGATTCGTCGCCTTTTTCCACTCAAATTTATAGAATTCTATGTGAGTCACTAGGGAAAATGGGGCGAGCTTTTGAAGCTCTGGAGTTCTTCAGAGATATGACAAAGAAGGGGATCTTGGAGGATTCTGCGGTTTACTCTTCTTTGATTTGTTCATTTGCAAGTATTCGAGAAGTGAAGGTAGCAGAAGAGCTGTTCAGAGAAGCAGAGGAGAAGAAAATTTTGAGGGATCCCGAGGTGTTTCTGAAACTTGTGTTGATGTATGTTGAAGAAGGGCTTATGGAGAGGACGCTTGAGATCGTTAAGGCCATGAAGAATGTGGAAATCCGGGTTTCTGATTGCATATTTTGTGCTATAGTTAATGGCTTCGCCAAGAAGAGAGGGCTCAGGGCTGCAGCCAAAGTCTATGATGAGCTGATCTTGCAGGGCTGTGAACCAGGACAAGTGACCTACGCTTCAATCATAAATGTCTATTGTCGTATGGAGCTCTACTCAAAAGCAGAAATGGTGTTTTCAGAAATGGAAAAGAAGGGGTTCAATAAATGCGTGGTGGCCTATTCTAGCATGGTGGTTATGTATGGAAAAACCGGTAGGCTGAGGGAGGCGATGAGGCTGGTCGCGAAGATGAAAGAAAGAGGATGCGAGCCCAATGTATGGGTTTACAACTCGCTCATGGACATGCACGGGAGAGTCAAGAATTTGAGGCAAGTGGAGAAGCTATGGAAGGAGATGAAGCGAAAGAAGGTGGTTCCTGATAGAGTGAGCTACACTAGTGTTATAAGCGCTTACAGCAAGGCAGGAGATTTTGAAACCTGCATGAGATTTTACCACGAATTTAGGATGAATGGAGGTGTCATCGACAGGGTTATTGCTGGGATCATGGTTGGGATTTTCTCCAAGAGTGGTCGGGTGGATGAGTTGGTTAAGCTTTTGCAGGATATGAAGACAGAAGGAACCGGGCTAGATGAGAGGCTGTATAGATCAGCCTTGAATGCTTTGAGGGACGCGGGGCTGCAAATGCAAGCAAGATGGTTGCAAGAGAGCTTCGACACAACTTTTGTTGAGGACTTAATGAGATTAGGAATTGAATAA 1212 0.4381 MKSAGVVPNSESYYRIMEAYIKIRDYEKVVTLFQEFESRKIDSSPFSTQIYRILCESLGKMGRAFEALEFFRDMTKKGILEDSAVYSSLICSFASIREVKVAEELFREAEEKKILRDPEVFLKLVLMYVEEGLMERTLEIVKAMKNVEIRVSDCIFCAIVNGFAKKRGLRAAAKVYDELILQGCEPGQVTYASIINVYCRMELYSKAEMVFSEMEKKGFNKCVVAYSSMVVMYGKTGRLREAMRLVAKMKERGCEPNVWVYNSLMDMHGRVKNLRQVEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDFETCMRFYHEFRMNGGVIDRVIAGIMVGIFSKSGRVDELVKLLQDMKTEGTGLDERLYRSALNALRDAGLQMQARWLQESFDTTFVEDLMRLGIE* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1271 403 Gene3D Tetratricopeptide repeat domain 1 111 IPR011990 GO:0005515
Vvi1g1271 403 Gene3D Tetratricopeptide repeat domain 121 286 IPR011990 GO:0005515
Vvi1g1271 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 116 IPR002885 -
Vvi1g1271 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Vvi1g1271 403 Pfam PPR repeat 333 358 IPR002885 -
Vvi1g1271 403 Pfam PPR repeat 12 40 IPR002885 -
Vvi1g1271 403 Pfam PPR repeat 85 113 IPR002885 -
Vvi1g1271 403 Pfam PPR repeat 294 323 IPR002885 -
Vvi1g1271 403 Pfam PPR repeat 57 79 IPR002885 -
Vvi1g1271 403 PANTHER OS03G0856100 PROTEIN 1 90 - -
Vvi1g1271 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Vvi1g1271 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Vvi1g1271 403 NCBIfam pentatricopeptide repeat 85 117 IPR002885 -
Vvi1g1271 403 NCBIfam pentatricopeptide repeat 260 292 IPR002885 -
Vvi1g1271 403 NCBIfam pentatricopeptide repeat 189 219 IPR002885 -
Vvi1g1271 403 NCBIfam pentatricopeptide repeat 294 327 IPR002885 -
Vvi1g1271 403 NCBIfam pentatricopeptide repeat 224 258 IPR002885 -
Vvi1g1271 403 SUPERFAMILY HCP-like 11 262 - -
Vvi1g1271 403 Pfam Pentatricopeptide repeat domain 140 199 IPR002885 -
Vvi1g1271 403 Pfam Pentatricopeptide repeat domain 210 269 IPR002885 -
Vvi1g1271 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Vvi1g1271 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 47 81 IPR002885 -
Vvi1g1271 403 Gene3D Tetratricopeptide repeat domain 287 393 IPR011990 GO:0005515
Vvi1g1271 403 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1271 Vvi-Chr1 18521166 18526595 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1271 1 389 Glycosyltransferase AT1G05670 22.365 5.89e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1271 - - vvi:100256233 771.926