Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1260 ATGGACTATGAAAGGATCCAAAAGCCTCAGGTTGGTGGAGGGTTTTCTCCGGGAAAGTTGAGGACTATGCTCTTGGGAGTGGAGAAGAAGAGGAAGGAAGAAGAAGGGCTTGATTCAAATTTCTCATTGAGATCTCAGGCTTCCGAGGTCGATGATGGAGGTGGTAGTTATTCTGACAATTGCAAAGATCTAGATGTTGTAAGTGAACTTCCTGAATGTTCCACTTCAGCGGCAGCTGACTCATTAGCACCAGAGATGATTAATGACCATCGATTGAAAGATCACCCTTCAGTTAATCCGAGAATTAGGTTTCAAGAAGACTTGCCTTTTGATTATGATAGTGGGCATGATGGTATGTGCGTATCCTCGTCAATATTTGAGTTCCAAAAGGCGGAGCGTGCCCCCCAGAGAGTGCCTGTTGGACCCTTCTCAAAACCTGCACCATCAAAATGGGATGATGCACAGAAATGGATTGCAAGCCCTACTTCAAACCGGCCAAAGGGTGGGCAAGGGGTTGGCTCACGAAAAGGTTATGGGAACCGGCAACCATCCACTAAGGTTGTTGTCGAAGTTCCAGATCAGAGATTGGTTCCTTTTGAAGAACCAGATACCAAGCGAATTGATCCGAGCCATTCCAAGAAGGAAAGTGCTGGGCAGAAGTTTGTTACTTGGGAAGTCGACTCGTACCCAACTGCAGATCCATATGCCAAGCCTGTTCTCATGATTGAGAATACCGTTGAAGAGTCAGCAATTAGCCTCAGTCGGCATGATCCATCCATGTCCATTCACAGTGCAACTACATTTATTCCACCTCCTTCAACTGCTAGGTCTGTGTCAATGAGAGATATGGGCACCGAAATGACTCCTATTGCCAGTCAAGAGCCTTCCAGGACTGGAACTCCTGTGAGGGCAACAACGCCGACTCGTAGTCCAACATCTTCTAGGCCTTCAACTCCAGGCAGAGGTGCACCAGCTTCATCTCCTGTTGGTCCACTTAATGACTGTCTGGATAGTAACAAGAATGAGCTATCTGAAAAGGAAATACAAATGAAAACTAGGAGAGAAATAATGGTTCTTGGAACGCAGCTTGGTAAGATGAATATTGCTGCCTGGGCTAGTAAAGAGGAGGAGGATAAGGATGCATCTACATCCCTGAAAACTGTAGCAGTGGAACAACCGACTAAAAGTGTCATTGAGACACGTGCAGCAGCTTGGGAGGAGGCGGAGAAAGCTAAGTATATGGCCAGGTTTGAACGTGAAGAGCTCAAAATACAAGTATGGGAAAATCATCAGAAAGCGAAGACAGAAGCTGAGATGAGGAAAATTGAGGTGGAGGTGGAAAGGATAAGGGGAAGGGCCCATGACAGGCTGATGAACAAGCTGGCAGCTGCAAGGCACAGGGCTGAGGAGAAGCGAGCGGCAGCAGAAGCCAAGAGGAGTCGACAAGCAGCAAAAACTGAGCAGCAAGCAGAGTATATACGAAAAACTGGGCGCATCCCTTCCTCTTTTTCCTGCTGGAATTGGTGCTCCTAA 1533 0.4716 MDYERIQKPQVGGGFSPGKLRTMLLGVEKKRKEEEGLDSNFSLRSQASEVDDGGGSYSDNCKDLDVVSELPECSTSAAADSLAPEMINDHRLKDHPSVNPRIRFQEDLPFDYDSGHDGMCVSSSIFEFQKAERAPQRVPVGPFSKPAPSKWDDAQKWIASPTSNRPKGGQGVGSRKGYGNRQPSTKVVVEVPDQRLVPFEEPDTKRIDPSHSKKESAGQKFVTWEVDSYPTADPYAKPVLMIENTVEESAISLSRHDPSMSIHSATTFIPPPSTARSVSMRDMGTEMTPIASQEPSRTGTPVRATTPTRSPTSSRPSTPGRGAPASSPVGPLNDCLDSNKNELSEKEIQMKTRREIMVLGTQLGKMNIAAWASKEEEDKDASTSLKTVAVEQPTKSVIETRAAAWEEAEKAKYMARFEREELKIQVWENHQKAKTEAEMRKIEVEVERIRGRAHDRLMNKLAAARHRAEEKRAAAEAKRSRQAAKTEQQAEYIRKTGRIPSSFSCWNWCS* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1260 510 MobiDBLite consensus disorder prediction 468 491 - -
Vvi1g1260 510 MobiDBLite consensus disorder prediction 32 59 - -
Vvi1g1260 510 MobiDBLite consensus disorder prediction 468 485 - -
Vvi1g1260 510 Coils Coil 454 487 - -
Vvi1g1260 510 Pfam Remorin, C-terminal region 398 501 IPR005516 -
Vvi1g1260 510 Coils Coil 432 452 - -
Vvi1g1260 510 MobiDBLite consensus disorder prediction 289 321 - -
Vvi1g1260 510 MobiDBLite consensus disorder prediction 159 184 - -
Vvi1g1260 510 PANTHER OS02G0116800 PROTEIN 95 506 - -
Vvi1g1260 510 MobiDBLite consensus disorder prediction 287 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1260 Vvi-Chr1 18163565 18172700 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1260 - - vvi:100251322 967.607