Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1253 ATGGAGAAATCAGGAGCGGCGCCCACCGGTTGCTACAAGTGTGGCCGCCCTGGCCACTGGTCACGTGACTGCCCTTCCTCTAACACTAACCCTAATCCTAACCCTAACCCGAACCCTAATTCTCAAAACCAATACTCCTCCTTTAACAAAGGCACTGCCTCCAAGCCGCTAGCCAAATCCTCCGAGAAGCCCAAAAAGGCCCCGAGAACAAGACCCAATCTCACTCCCGAGCTTCTTCTCTCCGACAATGGCCTCGGTTACGTCCTCCGCCACTTCCCTGGCGCTTTTAAGTTTCGCGGCCGCGGACATGAGGTTAGTGACTTGGGGAACCTGATTGGCTTGTACTCTGAATGGCACTCTCATTTGCTTCCGTACTACTCATTTGATCAATTTGTGCACAAGGTGGAAAAAGTGGGCACAACAAAACGTGTGAAGATATGTATCAGAGAGTTGAGAGAGAGAGTCGAAAATGGAGGTGATCTGACAAAGTTCCATGAACCACCTGTTGAACATGAAGATTGCCCAAATCATGATCAAGCTACTGAAGAAGTTATGAACTCAGTGGATCCAAGCCATTATCAGGGAGATACATCTTTAAACCATGAGGATGTACAAGAGGACATGCTTCATGAGGTTTATAGGAGTGCTACTGAAGAACCATCTCAAACCTTGGCCAGTGACATGGTTGCTGGGGATGTACCTTCTGAAGGTAGCTCCAAGAAAGAATTACCAAATCAAGTTCCTGAGAATGGACCTATTCGCTCTGATATTCAGATCACAGAAGAGCAAAAAGCTCGAATGGAAGCTAACAGGCAGAAGGCACTGGAGAGAGCTGCAGCCCGGGTCCGTTTGCAGCAGGCAGTCTAA 867 0.4856 MEKSGAAPTGCYKCGRPGHWSRDCPSSNTNPNPNPNPNPNSQNQYSSFNKGTASKPLAKSSEKPKKAPRTRPNLTPELLLSDNGLGYVLRHFPGAFKFRGRGHEVSDLGNLIGLYSEWHSHLLPYYSFDQFVHKVEKVGTTKRVKICIRELRERVENGGDLTKFHEPPVEHEDCPNHDQATEEVMNSVDPSHYQGDTSLNHEDVQEDMLHEVYRSATEEPSQTLASDMVAGDVPSEGSSKKELPNQVPENGPIRSDIQITEEQKARMEANRQKALERAAARVRLQQAV* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1253 288 PANTHER TIMELESS INTERACTING-RELATED 1 286 IPR040038 GO:0000076
Vvi1g1253 288 MobiDBLite consensus disorder prediction 239 257 - -
Vvi1g1253 288 ProSiteProfiles Zinc finger CCHC-type profile. 11 26 IPR001878 GO:0003676|GO:0008270
Vvi1g1253 288 SUPERFAMILY Retrovirus zinc finger-like domains 6 30 IPR036875 GO:0003676|GO:0008270
Vvi1g1253 288 Pfam Zinc knuckle 10 26 IPR001878 GO:0003676|GO:0008270
Vvi1g1253 288 Pfam Replication Fork Protection Component Swi3 74 154 IPR012923 GO:0005634|GO:0006974|GO:0031297
Vvi1g1253 288 Coils Coil 257 277 - -
Vvi1g1253 288 MobiDBLite consensus disorder prediction 1 77 - -
Vvi1g1253 288 MobiDBLite consensus disorder prediction 216 266 - -
Vvi1g1253 288 SMART c2hcfinal6 10 26 IPR001878 GO:0003676|GO:0008270
Vvi1g1253 288 MobiDBLite consensus disorder prediction 39 56 - -
Vvi1g1253 288 Gene3D - 2 41 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1253 K10904 - vvi:100240999 530.791