Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1246 ATGGCACCCATCTTGTGTACTCCAACAAGCCAGTTATCTTCGGAATCAAATGCAGCACAGACCCTTCATCTGCTTCAAAGATGTTCAAATATGGAGGAACTAAGGCAGATCCATGGCCAGATGTTGAAAACAGGCCTTATTCTTGATGAAATCCCAGCCAGCAAGCTCCTAGCTTTCTGTGCTTCACCGAATTCCGGGAGTTTAGCCTACGCCCGGACAGTTTTTGACAGGATATTCAGACCCAATACTTTCATGTGGAATACCATGATAAGAGGATACTCAAACAGCAAAGAACCTGAAGAAGCCCTACTTCTTTACCATCACATGCTGTATCATTCTGTTCCACACAATGCTTACACCTTCCCTTTCCTGCTGAAAGCCTGTTCCAGTATGTCAGCCTTGGAAGAAACTCAACAAATCCATGCTCACATCATTAAAATGGGCTTTGGCTCAGAGATATACACCACAAATTCCCTGCTGAATGTTTACTCCAAATCTGGTGACATTAAATCTGCCCGTCTCCTTTTTGACCAGGTAGACCAACGAGACACTGAAGCTTTGAATCTATTTCACAGAATGCAGACTGCAGGTATAAAACTTGACAATGTAGCACTGGTAAGCACGCTTCAAGCATGTGCGGATCTTGGAGTGTTGGATCAAGGCAAATGGATTCATGCCTACATTAAAAAGCATGAAATTGAAATTGACCCAATCCTGGGTTGTGTTCTCATAGACATGTATGCTAAGTGTGGCGACTTGGAAGAAGCCATAGAAGTTTTTAGAAAAATGGAGGAAAAAGGTGTCTCTGTATGGACAGCCATGATTTCTGGTTATGCAATTCATGGACGTGGAAGAGAAGCTCTTGAATGGTTTATGAAAATGCAGACTGCAGGAGTGGAACCAAACCAGATGACTTTCACAGGGATTTTGACTGCTTGTAGCCATGCAGGACTAGTACATGAGGCAAAATTGTTGTTTGAGAGCATGGAGAGAATTCATGGCTTCAAACCTTCGATAGAGCATTATGGGTGTATGGTTGACCTCCTGGGCCGAGCTGGGTTGTTGAAGGAAGCAGAAGAGTTAATTGAGAATATGCCTGTAAAACCAAATGCTGCCATTTGGGGGGCACTGCTCAATGCATGTCATATTCATGGAAATCTTGAGCTAGGTAAACAGATAGGGAAAATTTTGATTCAAGTGGATCCTGGCCATGGTGGCCGATACATTCACTTGGCAAGCATTCATGCAGCTGCAGGGGAATGGAACCAAGCAGCTAGAGTGAGACGACAGATGAAAGAGCAGGGAGTTTCAAAACTTCCAGGGTGCAGTGTGATCAGTGTGAATGGGACAGCTCATGAATTTTTAGCCGGGGATGAATCGCACCCGCAGATCAAAGAGATAGATCACATGTTGGAGCAGATTGTGGAGAGACTAAGAGAAGAAGGATATAAACCTAAACTAGGGGATTTGCTACTGGATCTAGAGGACAAGGAAAAAGAAACAGCAATTCATCATCATAGTGAGAAGCTTGCAGTCACATTTGGGCTCATCAGCACTAAACCAGGGATGACAATTCGGATAGTTAAGAATCTTCGAGTTTGTGAGGACTGTCACACAGTAATAAAGCTCATCTCCAAGGTCTATGCAAGGGAAATTCTCATGCGGGATAGAACACGGTTCCACCTTTTCAAAGACGGAAATTGTACTTGTGGGGACTACTGGTGA 1725 0.4383 MAPILCTPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1246 574 Pfam E motif 384 445 IPR046848 -
Vvi1g1246 574 FunFam Pentatricopeptide repeat-containing protein At5g66520 21 179 - -
Vvi1g1246 574 NCBIfam pentatricopeptide repeat 85 110 IPR002885 -
Vvi1g1246 574 NCBIfam pentatricopeptide repeat 305 338 IPR002885 -
Vvi1g1246 574 NCBIfam pentatricopeptide repeat 242 269 IPR002885 -
Vvi1g1246 574 NCBIfam pentatricopeptide repeat 270 302 IPR002885 -
Vvi1g1246 574 Gene3D Tetratricopeptide repeat domain 13 182 IPR011990 GO:0005515
Vvi1g1246 574 Gene3D Tetratricopeptide repeat domain 183 330 IPR011990 GO:0005515
Vvi1g1246 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 116 IPR002885 -
Vvi1g1246 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Vvi1g1246 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Vvi1g1246 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 301 IPR002885 -
Vvi1g1246 574 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 183 511 IPR046960 GO:0003723|GO:0009451
Vvi1g1246 574 Pfam PPR repeat family 81 129 IPR002885 -
Vvi1g1246 574 Pfam PPR repeat family 267 314 IPR002885 -
Vvi1g1246 574 Pfam DYW family of nucleic acid deaminases 482 574 IPR032867 GO:0008270
Vvi1g1246 574 SUPERFAMILY TPR-like 246 426 IPR011990 GO:0005515
Vvi1g1246 574 Pfam PPR repeat 341 366 IPR002885 -
Vvi1g1246 574 Pfam PPR repeat 155 179 IPR002885 -
Vvi1g1246 574 FunFam Pentatricopeptide repeat-containing protein At3g26630, chloroplastic 180 330 - -
Vvi1g1246 574 FunFam Pentatricopeptide (PPR) repeat-containing protein 331 493 - -
Vvi1g1246 574 Pfam E+ motif 452 478 IPR046849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1246 Vvi-Chr1 17879905 17881773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1246 15 574 Glycoside Hydrolase AT3G49170 35.666 3.77e-126 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1246 - - vvi:100266692 1100.12