Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1238 ATGGCGTCACTCTGCAGAATCCCTAGACGCCTCCTCTCTCTCGCCCGTTTCTCCACCCTCTCTGACCCATTTACCACCTTCCTTGCCGCCAAATCCGCCGTAGAGTCCGAGCCCGACCCAGAAAAGCTCGCCCACATCTTCCACCACCAATCCTCCAACTTCGCCCGCTTCCGCCGCCACCGCCCCCTCTACCAACTCTCCTGCCGCCGCCTCTCCAGGTCTGGCCGCCTCGACCTCGTCGAGCGCCTCATCGACCACCAGAAAACCCTACCCCACCCCCGTACCGAAGGCTTCTGGATACGCCTCATCATGCTCTACTCCACCTCCGGCATGGTCGACCACGCCCTCCGTACATTTCACCAAATGGTTCAAGATCGTGTCCAATTGACCGAGAAATCGCTCTGTGCGATTCTCACAGTTTATTTAGACAATGATTTGATTGACCAATTGCATACGGTTTTCAACACCATGCCCTCGGAGATTGGTGTTTCTCCAGGAACGAAGTCGTATAGTTTGGTTCTGAAGGCATTTTGCCAACAGAAGGATATGGAATCCGCTCGAAAGTTGCTTCATAAGATGGAAAATCCGGATATTGGATCGTATAATGTGCTGCTAGAGGCTTATTCGGAGAATGGAGATGGGGTTGAATTCGATGAGATTCTGAAGGAGATTAAGAATAAAGGTTTGGAGCATGACTGCACCACTTACAATCATAGGATTTTGAGGTTTTGCAAGAATAAGGAGTCTGTTCGGGCCAAAAAGCTGTTGGATGAGATGGTAGCCAAGGGAGTGAAGCCGAATTCGGCTAGTTATAATATGATTATTCATGGGTTTTGCAAGGTGGGGGATTTTGAATCAGCGCAGAAGGTTTTGGGGAGAATGTTGGCGGATGGATATGTTGCTCCCTGTTCGATTTCTTATATTACTTTGTTTCAGCATATGGTTAAGGAGGGAGAGTTTGATTCAGCATTGAATATGTGCAAGGAGATTATAAGGAGGAAATGGGTTCCTCCATTTGAGGCCATGGATGGTCTGGTTAAGGGGTTGGTGGAAATTTCGAAAGTGGAGGCTGCAAAAGAAGTCGTTGAGAAGATGAAGAAGAGGCTTAAAGGGAATGCTGCGGATTCTTGGAAAACGCATGAAGCTGCACTGCCTTTGTAG 1161 0.4892 MASLCRIPRRLLSLARFSTLSDPFTTFLAAKSAVESEPDPEKLAHIFHHQSSNFARFRRHRPLYQLSCRRLSRSGRLDLVERLIDHQKTLPHPRTEGFWIRLIMLYSTSGMVDHALRTFHQMVQDRVQLTEKSLCAILTVYLDNDLIDQLHTVFNTMPSEIGVSPGTKSYSLVLKAFCQQKDMESARKLLHKMENPDIGSYNVLLEAYSENGDGVEFDEILKEIKNKGLEHDCTTYNHRILRFCKNKESVRAKKLLDEMVAKGVKPNSASYNMIIHGFCKVGDFESAQKVLGRMLADGYVAPCSISYITLFQHMVKEGEFDSALNMCKEIIRRKWVPPFEAMDGLVKGLVEISKVEAAKEVVEKMKKRLKGNAADSWKTHEAALPL* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1238 386 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Vvi1g1238 386 Pfam PPR repeat family 234 280 IPR002885 -
Vvi1g1238 386 Gene3D Tetratricopeptide repeat domain 245 384 IPR011990 GO:0005515
Vvi1g1238 386 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 64 368 - -
Vvi1g1238 386 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Vvi1g1238 386 NCBIfam pentatricopeptide repeat 270 300 IPR002885 -
Vvi1g1238 386 NCBIfam pentatricopeptide repeat 169 194 IPR002885 -
Vvi1g1238 386 NCBIfam pentatricopeptide repeat 200 233 IPR002885 -
Vvi1g1238 386 NCBIfam pentatricopeptide repeat 235 268 IPR002885 -
Vvi1g1238 386 NCBIfam pentatricopeptide repeat 305 337 IPR002885 -
Vvi1g1238 386 Gene3D Tetratricopeptide repeat domain 67 244 IPR011990 GO:0005515
Vvi1g1238 386 Pfam PPR repeat 306 333 IPR002885 -
Vvi1g1238 386 Coils Coil 352 372 - -
Vvi1g1238 386 Pfam Pentacotripeptide-repeat region of PRORP 111 226 IPR033443 -
Vvi1g1238 386 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1238 Vvi-Chr1 17594007 17595167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1238 162 371 Glycosyltransferase AT1G05670 22.727 3.59e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1238 - - vvi:100244449 750.355