Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g1236 | ATGGCATCACCAGCTTGGTTGCCGGTGGAAGTGCAGTCTTCAGCATCTCAGAATCCTGTCACTGGTTTACCTGCCGGAGGGCCTTCTGGGGGGCCTCCTACTCCAACTGGAGCCATTGCTCCTGCTTCAGTTGCTACTATACGTACTTCAGAGGGTGCAAGTGGTACTGCAAGTAATTCAATTCAAGAATCTGCTCAAGGAAAATTTGTTAATGCACCTCCCCATGTACTTCCAGGACCCTCATTCTCATACAGTGGTATTCCACATGTTACCACTGCATCTGGAACCTCACAGCAGTTACCATCTGGTTCAGTGATAAGTTCAAATCCACTAGCATCTACAGTGGTCTTTCAAACCCCAGTTCCTGGTCCCTCTTCATCTTCTGGTCCCTCATTCTCATACAACATTGCACATAAAGGTGCTGGTTTCCCTGGTAGCCAGCCGTTCCAATCTAGCACATCTATTGCTTCTGGTCCAAGAGGACCCACACCAAATGCTGCAAGCTTTTCTTTTAATGGTAACCCTCAATTGGTGCAGAAAGATCAAACCTTGAAATCTGATAACTCAGGGGCTGTTGCACAAGAAGCTGGTAGTATGTCTTCTGCTTCTCATGTCTCTCAGTCTGTTCCATTTCCTTGCTCAAGTTCTACAATGTCTGTATCTTCATCTCCCAAGATGGGCCCGACAACTTTATGGATGCCCTCTAACCCATCTTTTCCTGTGCCTTCTGGAATGCCTGTAACTCCTGGAACACCTGGCCCCCCTGGAATAGCTCCATCTACACCATTATCCTCCAATCTGGCTGTCCCATCTGCATCCATGGATTTCTCTTCTTCTGTGGTTTCAAGAGCTATTTTTCCGGCTGCTCCTGTTTCGTCAAACCCAGCTATTCAGCAGCAAATATATCCTTCCTATTCATCTTTGCCTGCCACAAATGCTTCCTCTCAGGGACCATGGTTGCAGCCCCCACAAATGGGTGGTTTGCCAAGGCCACCATTTGTACCTTATCCTGCTGTCTATCCCACTCCCTTTCCTTTGCCAGCCCATGGCATGCCTCTTCCTTCTGTTCCATTGCCTGATTCCCAACCTCCTGGAGTAACTCCAGTGGGAACTGCAGGTGGAACTCCTATATCTGCTGCAGTTTCAGGTCATCACCTGGCAAATACTTCAGGGATGCTGTCGGAATTACCTCCTCCAGGAATTGATGACAATAAGCATGTCAATGGTGCTGGAACCAAGGATGGAGCAGCTGTGAATGAACAAGTAGATGCCTGGACTGCCCACAAGACTGACACTGGAGTTGTGTACTACTATAATGCTTTAACAGGAGAATCCACTTATGAAAAACCCTCTGATTTTAAGGGAGAGGCTGATAAAGTTACCGTACAGCCAACTCCAGTTTCATGGGAAAAGTTGACTGGCACTGATTGGGCATTGGTTACCACTAATGATGGCAAAAAATATTACTACAACACCAAAACCAAGTTAAGCAGCTGGCAAATCCCAACTGAGTTGACTGAGATGAGAAAGAAGCAGGACAGTGTTGCTTTAAAAGAACATGCAATGTTAGCACCAAATACCAATGTGTCAACAGAAAAAGGGCCTTCCCCAATTGCTTTGAGTGCTCCTGCTGTTACCACTGGTGGACGTGATGCCACACCTCTTAGAACCTCAGCTGTTCCAGGATCAGCATCTGCCCTGGATATGATAAAAAAGAAGTTGCAGGACTCTGGAGCTCCTGCTACTTCTTCGCCTGTTCATTCATCTGGACCAATTGCATCAGAATTAAATGGTTCACGAGTGATTGAGCCCACAGTCAAGGGCCTGCAAAGTGAAAACAGCAAAGACAAGCTAAAAGACACTAATGGGGATGGTAATATGTCTGACTCTTCTTCAGATTCTGAGGATGTAGACAGTGGACCCACAAAGGAGGAGTGTATCATCCAATTCAAGGAGATGCTTAAGGAACGTGGAGTGGCACCTTTTTCAAAATGGGAGAAAGAACTGCCGAAGATTGTTTTTGATCCACGTTTCAAGGCTATTCCAGGCTATTCTGCTAGGAGATCCTTGTTTGAGCACTATGTTAGAACACGTGCTGAGGAGGAGCGAAAGGAAAAACGAGCAGCTCAGAGGGCTGCAATAGAGGGCTTCAAGCAGTTGCTGGAAGAAGCATCAGAGGATATTGATCACAAGACTGAGTATCAAACATTCAGAAAGAAATGGGGTGATGACCCGAGGTTCGAGGCTTTGGACCGCAAGGATCGGGAACTTCTGTTGAATGAAAGGGTCCTCCCTCTGAAGAGGGCTGCTGAAGAGAAGGCTCAAGCAATACGTGCAGCAGCTGTCTCTAGCTTCAAGTCCATGCTTCGTGACAAAGGAGATATAACAACAAGTACCCGTTGGTCCAGGGTGAAGGATAGCCTAAGGAATGACCCCAGATATAAATGTGTTAAACATGAGGATAGGGAGATTTTATTTAATGAGTATATATCTGAGTTAAAAGCTGCTGAAGAGGAAGTGGAACGAGAAGCAAAATCCAAAAAGGAGGAGCAGGATAAATTGAAGGAAAGGGAGCGAGAATTACGGAAACGGAAAGAAAGGGAAGAACAAGAAATGGAGAGGGTGCGACTGAAAGTGCGCAGAAAAGAGGCGGTATCATCTTATCAAGCCTTACTTGTGGAAACCATTAAGGACCCTCAGGTATCTTGGACGGAATCAAAGCCTAAATTGGAGAAAGATCCACAAGCACGTGCAACAAATTCTGATCTTGATCCATCTGACCTGGAGAAGCTCTTCCGGGAACACATAAAGATGCTTCATGAGCGGCGTGCACACGAGTTTAGAGCTTTGTTGTCTGAAGTCCTAACTGCAGAAGCAGCTACACAGGAGACTGAAGATGGAAAAACAGTTCTGACATCATGGTCGACGGCCAAACGTCTGCTGAGATCTGATACCAGGTATATAAAGATGCCAAGAAAAGATAGGGAATCAGTATGGCGCAGATATAGCGAGGAGATGCTGCGGAAGCAAAAATTGGCGCAGGATCAAACTGAAGAGAAGCATACAGAAGTAAAAGGTAGAAGCTCTGTTGATTCCGGGAGATTTCCATCTGGGTCAAGGAGAGCCCATGAGCGAAGATGA | 3141 | 0.4629 | MASPAWLPVEVQSSASQNPVTGLPAGGPSGGPPTPTGAIAPASVATIRTSEGASGTASNSIQESAQGKFVNAPPHVLPGPSFSYSGIPHVTTASGTSQQLPSGSVISSNPLASTVVFQTPVPGPSSSSGPSFSYNIAHKGAGFPGSQPFQSSTSIASGPRGPTPNAASFSFNGNPQLVQKDQTLKSDNSGAVAQEAGSMSSASHVSQSVPFPCSSSTMSVSSSPKMGPTTLWMPSNPSFPVPSGMPVTPGTPGPPGIAPSTPLSSNLAVPSASMDFSSSVVSRAIFPAAPVSSNPAIQQQIYPSYSSLPATNASSQGPWLQPPQMGGLPRPPFVPYPAVYPTPFPLPAHGMPLPSVPLPDSQPPGVTPVGTAGGTPISAAVSGHHLANTSGMLSELPPPGIDDNKHVNGAGTKDGAAVNEQVDAWTAHKTDTGVVYYYNALTGESTYEKPSDFKGEADKVTVQPTPVSWEKLTGTDWALVTTNDGKKYYYNTKTKLSSWQIPTELTEMRKKQDSVALKEHAMLAPNTNVSTEKGPSPIALSAPAVTTGGRDATPLRTSAVPGSASALDMIKKKLQDSGAPATSSPVHSSGPIASELNGSRVIEPTVKGLQSENSKDKLKDTNGDGNMSDSSSDSEDVDSGPTKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPGYSARRSLFEHYVRTRAEEERKEKRAAQRAAIEGFKQLLEEASEDIDHKTEYQTFRKKWGDDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAVSSFKSMLRDKGDITTSTRWSRVKDSLRNDPRYKCVKHEDREILFNEYISELKAAEEEVEREAKSKKEEQDKLKERERELRKRKEREEQEMERVRLKVRRKEAVSSYQALLVETIKDPQVSWTESKPKLEKDPQARATNSDLDPSDLEKLFREHIKMLHERRAHEFRALLSEVLTAEAATQETEDGKTVLTSWSTAKRLLRSDTRYIKMPRKDRESVWRRYSEEMLRKQKLAQDQTEEKHTEVKGRSSVDSGRFPSGSRRAHERR* | 1047 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g1236 | 1046 | SUPERFAMILY | FF domain | 874 | 942 | IPR036517 | - | |
| Vvi1g1236 | 1046 | SMART | FF_2 | 643 | 697 | IPR002713 | - | |
| Vvi1g1236 | 1046 | SMART | FF_2 | 881 | 938 | IPR002713 | - | |
| Vvi1g1236 | 1046 | SMART | FF_2 | 778 | 832 | IPR002713 | - | |
| Vvi1g1236 | 1046 | SMART | FF_2 | 710 | 765 | IPR002713 | - | |
| Vvi1g1236 | 1046 | Gene3D | FF domain | 709 | 766 | IPR036517 | - | |
| Vvi1g1236 | 1046 | MobiDBLite | consensus disorder prediction | 9 | 23 | - | - | |
| Vvi1g1236 | 1046 | MobiDBLite | consensus disorder prediction | 544 | 563 | - | - | |
| Vvi1g1236 | 1046 | FunFam | Pre-mRNA-processing protein 40C isoform C | 706 | 769 | - | - | |
| Vvi1g1236 | 1046 | Gene3D | - | 420 | 462 | - | - | |
| Vvi1g1236 | 1046 | FunFam | Pre-mRNA-processing protein 40C | 770 | 844 | - | - | |
| Vvi1g1236 | 1046 | SUPERFAMILY | WW domain | 424 | 456 | IPR036020 | GO:0005515 | |
| Vvi1g1236 | 1046 | SUPERFAMILY | WW domain | 476 | 508 | IPR036020 | GO:0005515 | |
| Vvi1g1236 | 1046 | FunFam | Pre-mRNA-processing protein 40C | 878 | 938 | - | - | |
| Vvi1g1236 | 1046 | ProSiteProfiles | FF domain profile. | 643 | 697 | IPR002713 | - | |
| Vvi1g1236 | 1046 | FunFam | Pre-mRNA-processing protein 40C | 940 | 1005 | - | - | |
| Vvi1g1236 | 1046 | ProSiteProfiles | FF domain profile. | 710 | 765 | IPR002713 | - | |
| Vvi1g1236 | 1046 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Vvi1g1236 | 1046 | MobiDBLite | consensus disorder prediction | 145 | 208 | - | - | |
| Vvi1g1236 | 1046 | MobiDBLite | consensus disorder prediction | 577 | 595 | - | - | |
| Vvi1g1236 | 1046 | MobiDBLite | consensus disorder prediction | 143 | 208 | - | - | |
| Vvi1g1236 | 1046 | SUPERFAMILY | FF domain | 642 | 703 | IPR036517 | - | |
| Vvi1g1236 | 1046 | MobiDBLite | consensus disorder prediction | 574 | 642 | - | - | |
| Vvi1g1236 | 1046 | MobiDBLite | consensus disorder prediction | 841 | 870 | - | - | |
| Vvi1g1236 | 1046 | ProSitePatterns | WW/rsp5/WWP domain signature. | 425 | 450 | IPR001202 | GO:0005515 | |
| Vvi1g1236 | 1046 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 425 | 452 | IPR001202 | GO:0005515 | |
| Vvi1g1236 | 1046 | CDD | WW | 425 | 452 | IPR001202 | GO:0005515 | |
| Vvi1g1236 | 1046 | MobiDBLite | consensus disorder prediction | 904 | 924 | - | - | |
| Vvi1g1236 | 1046 | SUPERFAMILY | FF domain | 702 | 771 | IPR036517 | - | |
| Vvi1g1236 | 1046 | Gene3D | FF domain | 641 | 708 | IPR036517 | - | |
| Vvi1g1236 | 1046 | ProSiteProfiles | FF domain profile. | 881 | 938 | IPR002713 | - | |
| Vvi1g1236 | 1046 | SUPERFAMILY | FF domain | 939 | 1011 | IPR036517 | - | |
| Vvi1g1236 | 1046 | Pfam | FF domain | 649 | 694 | IPR002713 | - | |
| Vvi1g1236 | 1046 | Pfam | FF domain | 883 | 935 | IPR002713 | - | |
| Vvi1g1236 | 1046 | Pfam | FF domain | 713 | 760 | IPR002713 | - | |
| Vvi1g1236 | 1046 | Pfam | FF domain | 781 | 829 | IPR002713 | - | |
| Vvi1g1236 | 1046 | FunFam | pre-mRNA-processing protein 40C isoform X1 | 628 | 705 | - | - | |
| Vvi1g1236 | 1046 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR 1 | 96 | 1041 | IPR045148 | GO:0003712|GO:0070063 | |
| Vvi1g1236 | 1046 | SMART | ww_5 | 472 | 504 | IPR001202 | GO:0005515 | |
| Vvi1g1236 | 1046 | SMART | ww_5 | 420 | 452 | IPR001202 | GO:0005515 | |
| Vvi1g1236 | 1046 | Gene3D | FF domain | 767 | 845 | IPR036517 | - | |
| Vvi1g1236 | 1046 | SUPERFAMILY | FF domain | 773 | 839 | IPR036517 | - | |
| Vvi1g1236 | 1046 | MobiDBLite | consensus disorder prediction | 1009 | 1028 | - | - | |
| Vvi1g1236 | 1046 | Pfam | WW domain | 424 | 450 | IPR001202 | GO:0005515 | |
| Vvi1g1236 | 1046 | Coils | Coil | 826 | 885 | - | - | |
| Vvi1g1236 | 1046 | CDD | WW | 475 | 504 | IPR001202 | GO:0005515 | |
| Vvi1g1236 | 1046 | Gene3D | FF domain | 878 | 938 | IPR036517 | - | |
| Vvi1g1236 | 1046 | Gene3D | FF domain | 939 | 1005 | IPR036517 | - | |
| Vvi1g1236 | 1046 | Gene3D | - | 463 | 521 | - | - | |
| Vvi1g1236 | 1046 | ProSitePatterns | WW/rsp5/WWP domain signature. | 477 | 502 | IPR001202 | GO:0005515 | |
| Vvi1g1236 | 1046 | ProSiteProfiles | FF domain profile. | 778 | 832 | IPR002713 | - | |
| Vvi1g1236 | 1046 | MobiDBLite | consensus disorder prediction | 1009 | 1046 | - | - | |
| Vvi1g1236 | 1046 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 477 | 504 | IPR001202 | GO:0005515 | |
| Vvi1g1236 | 1046 | MobiDBLite | consensus disorder prediction | 903 | 924 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi1g1236 | K12824 | - | vvi:100254722 | 1877.83 |