Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g1233 | ATGGCAAACTATTCAGGAACAGGAGCCCCTTCAAATGGCTCTGTCTATGTTTGTAACTTGCCTCATGGAACTGATGAAACTATGTTGGCTGAATATTTTGGCACCATTGGGTTGATAAAGAAAGACAAAAGAACAGGTCGACCTAAGATATGGTTGTACCGGGACAAAGTCACTAATGAACCAAAGGGTGATGCAACTGTAACATATGAGGATCCACATGCTGCATTAGCTGCTGTTGAATGGTTCAACAACAAAGATTTCCATGGAAGCATCATTGGAGTATTTATAGCGGAGTCGAAGAACAAAGATGATCACTCATATAACTCAGGGAATCAAGTGAATGATGTTGGAGATCCTGGTGCAGCCAGTGACTTAAGGGGTTTAGAAGAAGATCCTCTTGATATGAATGGAAGTGCTGGAAGAGGTAGAGGTCGGGGTGATGCTGCAGGAAAGGCATGGCAACAAGATGGAGACTGGTTGTGTCCGAATACAAGTTGTTCGAACGTGAACTTTGCATTTCGTGGTGTGTGCAATCGTTGTGGAAGTGCTCGACCTTCTGGTGTGTCTGGCAGTGGTGCAGGGGCAGGTGGTCGGGGGAGGGGCCGTGGTGGTCCTGACTCTGCAGGCCATGGCCGTTCAGTTGGTGCTCCAACAGGTCTTTTTGGTCCAAATGATTGGCCCTGTCCAATGTGTGGCAACATTAACTGGGCAAAGCGGACAAAGTGCAATATATGCAACACCAATAAGCCTGGCCATAATGAAGGTGGTGTGAGAGGAGGACGTGGTGGAGGTTACAAAGAACTTGATGAAGAAGAACTAGAGGAGACCAAAAGACGCCGGCGGGAGGCTGAAGAAGATGACGGTGAGTTGTATGATGAATTTGGAAATCTCAAAAAGAAGTTCCGTGCCAAAACGCAGCAAGCCGAAGCTGGACAGGTGCTTCCAGGTGCTGGGCGTGCAGGATGGGAAGTAGAGGAATTAGGTATGGCCGACAGAGATGGTAGAGAAAGAAGCAAAGACAGGGGAAGGGAGCGCGATGACAGGGAGAAGAATAGAGAACGAGATGATAGGGATAGGCGTCGGAGCCGAAGCAGGGAGAGGGATAGGGGAAAAGATCGAGACCGAGACCGAGATTATGATCACGATCGAGACAGAGACTATGGACGGGACCGGGACAGGGACAGGGACCGGGACCGGGACCGGGATAGAGACAGGGACCGGGATCGGAGCAGATACCGTTATTGA | 1245 | 0.4948 | MANYSGTGAPSNGSVYVCNLPHGTDETMLAEYFGTIGLIKKDKRTGRPKIWLYRDKVTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIGVFIAESKNKDDHSYNSGNQVNDVGDPGAASDLRGLEEDPLDMNGSAGRGRGRGDAAGKAWQQDGDWLCPNTSCSNVNFAFRGVCNRCGSARPSGVSGSGAGAGGRGRGRGGPDSAGHGRSVGAPTGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGELYDEFGNLKKKFRAKTQQAEAGQVLPGAGRAGWEVEELGMADRDGRERSKDRGRERDDREKNRERDDRDRRRSRSRERDRGKDRDRDRDYDHDRDRDYGRDRDRDRDRDRDRDRDRDRDRSRYRY* | 415 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g1233 | 414 | MobiDBLite | consensus disorder prediction | 325 | 414 | - | - | |
| Vvi1g1233 | 414 | FunFam | Zinc finger Ran-binding domain-containing protein 2 | 217 | 251 | - | - | |
| Vvi1g1233 | 414 | MobiDBLite | consensus disorder prediction | 263 | 290 | - | - | |
| Vvi1g1233 | 414 | MobiDBLite | consensus disorder prediction | 307 | 414 | - | - | |
| Vvi1g1233 | 414 | SUPERFAMILY | Ran binding protein zinc finger-like | 215 | 252 | IPR036443 | - | |
| Vvi1g1233 | 414 | Gene3D | - | 221 | 252 | - | - | |
| Vvi1g1233 | 414 | Gene3D | - | 153 | 188 | - | - | |
| Vvi1g1233 | 414 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 222 | 251 | IPR001876 | - | |
| Vvi1g1233 | 414 | Pfam | Zn-finger in Ran binding protein and others | 156 | 186 | IPR001876 | - | |
| Vvi1g1233 | 414 | Pfam | Zn-finger in Ran binding protein and others | 225 | 251 | IPR001876 | - | |
| Vvi1g1233 | 414 | MobiDBLite | consensus disorder prediction | 182 | 219 | - | - | |
| Vvi1g1233 | 414 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 13 | 99 | IPR000504 | GO:0003723 | |
| Vvi1g1233 | 414 | MobiDBLite | consensus disorder prediction | 250 | 290 | - | - | |
| Vvi1g1233 | 414 | SMART | rrm1_1 | 14 | 95 | IPR000504 | GO:0003723 | |
| Vvi1g1233 | 414 | SUPERFAMILY | Ran binding protein zinc finger-like | 150 | 187 | IPR036443 | - | |
| Vvi1g1233 | 414 | CDD | RRM_SARFH | 15 | 97 | - | - | |
| Vvi1g1233 | 414 | FunFam | TATA-binding protein-associated factor 2N isoform X1 | 153 | 187 | - | - | |
| Vvi1g1233 | 414 | ProSitePatterns | Zinc finger RanBP2-type signature. | 159 | 180 | IPR001876 | - | |
| Vvi1g1233 | 414 | Coils | Coil | 266 | 293 | - | - | |
| Vvi1g1233 | 414 | PANTHER | ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED | 60 | 411 | - | - | |
| Vvi1g1233 | 414 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 15 | 90 | IPR000504 | GO:0003723 | |
| Vvi1g1233 | 414 | MobiDBLite | consensus disorder prediction | 103 | 151 | - | - | |
| Vvi1g1233 | 414 | ProSitePatterns | Zinc finger RanBP2-type signature. | 226 | 245 | IPR001876 | - | |
| Vvi1g1233 | 414 | SUPERFAMILY | RNA-binding domain, RBD | 10 | 102 | IPR035979 | GO:0003676 | |
| Vvi1g1233 | 414 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 155 | 186 | IPR001876 | - | |
| Vvi1g1233 | 414 | SMART | zf_4 | 224 | 248 | IPR001876 | - | |
| Vvi1g1233 | 414 | SMART | zf_4 | 157 | 183 | IPR001876 | - | |
| Vvi1g1233 | 414 | Gene3D | - | 12 | 95 | IPR012677 | - | |
| Vvi1g1233 | 414 | FunFam | HIV Tat-specific factor 1 | 12 | 96 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi1g1233 | Vvi-Chr1 | 17391602 | 17400950 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi1g1233 | - | - | vvi:100249627 | 595.119 |