Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1232 ATGCCAGAGCTCTGTGATCTGCAAATCCATGTGAATGCCCAACAAACATTCTTTGTGAATGAGAAGATTATATCAAAGTATTCAGGGAGGTTGAAGAAGGTCATCAAGCAAGAAAAGAGAAGAACCCAGATCAAGAATTCGGGCATCGATATCGATGACTTTCCAGGTGGAGCAGATGGGTTTGAGCTGGTCTCAAGATTCTGCTACAACCATGGCAAGATAACTGTAACCGTGTCAAATGTGTCTCTCCTCCATTGCTGTGCAGTCTTTCTTGGAATGACTGAGAAGGTTTCACCTTGCAATCTCTTGCAACAGACAGAGACCTTTCTTGAAGGAATGTTTTACTGGTCATGGAATGATATACTGGTTTCTCTCAAGAGCTGTGAATCATTCTTCTCATATGCAGACTCATCAGGCCTTTTGGAAAAGCTCATAGGTGCACTTCTGGCAAAGTTTGCGCAGAATTCAGACATAATCCTCATTGCTCCATCTTCTTCTTCTTCATCTTCTCCTGAGACTACATCAGGGTTTCAGTTCTCTTCCTCGACGAAGAACACTCCTCAATCCATCAGGCGCCGTTCATCTAGCAAGGCATGGTGGTTTGATGATTTGAGCATTTTACCTCCAAAGATTATAGAGAAGGTCATCAAAAGCTTAGGGGCTTATAGCACTGAAAACAACAGCTTAGTCCTCACGAAATTCCTCCTCCATTACCTTCAGAAAACTGCTGTCCATAGAAAAGGTTCATTGAATTCAAGGTCTGAGTACGGTAGCCTTGCAGACACAGTTGCATATGGGGTGATTTTATTGGGGAAGACAGCATTTTCTTGGAGGGGTCTGTTCTGGATATTGAGGGTTGTTTCCGGATTGGGTCTGAGCAGAGACTGTAGAATTGGGCTGGAGAGATTGATTGGGGGGATGCTTGATCAAGCAACGTTGGATGATTTGTTGGTGTGCGGGCATGATGGGGGTGTTTATGATGTGAATCTGGTGTTGAGATTGATTAGAGTTTTTGTTAGTGATGATGGTGTGTCCGCACAGAAGATGAAGAAAGTTGGAAGATTGATTGATAAGTACTTGGGAGAGGTGTCTCCTGATCAGAATCTGAAGATCTCAAAGTTTCTCGGGGTTGCAGAAAGCTTACCAGATTCTGCAAGAGATTGTTTTGATGGAGTCTACAGAGCTATTGACATCTATCTTCAGTCTCATCCTACTCTTTCATTTGAGGAGCGATCAAGGTTATGCAGATGCCTAAACTATGAGAAGCTAACCCTGGAAGCCTGCAAAGACCTCGCGAAGAGCCCGAGAATTCCTCCAAAGATTGCAGTTCAAGCACTTGCCTCTCAGTCTCAGCAATGCACCATACCAACAACACAAGAATTTGTATATGAGAGTCCCATCAAGAGCCACGCCCAAATGGTCTTGTACAACAGCTTTGATGCAGAAAGCGTCTCCGAAGAGAATGAAGACATGAGGTTGAACCTGCAAAGAATGCAATGGAGGGTGGTAGAGTTAGAGAGAGCCTGCAGGAAGATGAAGGGTGAGATGTCAAGAATGGCAAGAAACAAGATTGCTACTTCACCTGGTAACAATAGAGCATTGCCTAGACTATGTTGA 1617 0.4391 MPELCDLQIHVNAQQTFFVNEKIISKYSGRLKKVIKQEKRRTQIKNSGIDIDDFPGGADGFELVSRFCYNHGKITVTVSNVSLLHCCAVFLGMTEKVSPCNLLQQTETFLEGMFYWSWNDILVSLKSCESFFSYADSSGLLEKLIGALLAKFAQNSDIILIAPSSSSSSSPETTSGFQFSSSTKNTPQSIRRRSSSKAWWFDDLSILPPKIIEKVIKSLGAYSTENNSLVLTKFLLHYLQKTAVHRKGSLNSRSEYGSLADTVAYGVILLGKTAFSWRGLFWILRVVSGLGLSRDCRIGLERLIGGMLDQATLDDLLVCGHDGGVYDVNLVLRLIRVFVSDDGVSAQKMKKVGRLIDKYLGEVSPDQNLKISKFLGVAESLPDSARDCFDGVYRAIDIYLQSHPTLSFEERSRLCRCLNYEKLTLEACKDLAKSPRIPPKIAVQALASQSQQCTIPTTQEFVYESPIKSHAQMVLYNSFDAESVSEENEDMRLNLQRMQWRVVELERACRKMKGEMSRMARNKIATSPGNNRALPRLC* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1232 538 Coils Coil 481 522 - -
Vvi1g1232 538 MobiDBLite consensus disorder prediction 164 190 - -
Vvi1g1232 538 Pfam NPH3 family 199 428 IPR027356 -
Vvi1g1232 538 ProSiteProfiles BTB domain profile. 5 70 IPR000210 GO:0005515
Vvi1g1232 538 PANTHER OS12G0117600 PROTEIN 5 513 IPR043454 -
Vvi1g1232 538 Gene3D Potassium Channel Kv1.1; Chain A 1 112 IPR011333 -
Vvi1g1232 538 ProSiteProfiles NPH3 domain profile. 198 452 IPR027356 -
Vvi1g1232 538 SUPERFAMILY POZ domain 3 100 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1232 Vvi-Chr1 17377130 17379283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1232 29 518 EF-hand Containing Proteins AT3G44820 28.000 8.55e-58 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1232 - - vvi:100259859 1064.68