Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1231 ATGGCACGTGTGATGGGCAAAGAAGAGCTAAGAATAGATATCAGCTCGCTAGCACAAGATGGACATGAAATTGAGACTGGGACTTCACCTGAACAGATGTCACCTGTAGATCTAATTTCTGGAGATAGAGACCTCTACCTCGCTGTATGCATACCTCTTTATCGTGCCGCCATGAAAGGTGACTGGAAAACTGCTAAAGGTATTTTTGAAATGTTTCCAGCAGCAGTGCGCTTCACCATCACACCAGGAGGGGACACAACCCTTCATATTGCTGCTGCAGCAAAGCATGTCTACTTTGTTGAGGAGATGGTGAAAATTATGGAACCAGAAGACTTAGAACTTAAGAACCAATATTCGAATACTGCTTTTTGGTTTGCTGCTGCAGCAGGAATAGTGGGAATTGCAAAGGCTATGGTGAAAAAGAATGAAATCCTTCCAATGATCCGAGCTTATGATGAAATGACACCACTCCATGTGGCTGCTCTATTAGGACATAGTGAGATGGTGTGGTATCTCTACAACAAGACTGATCATGAACAATTAACTGTTAGCGATTGGGTTAAGCTGCTTAATGCATGCATCAGTACTGATCTGTATGATGTAGCCTTGGACGTATCGAGCCATCACCCAACATTGGCTGTAGAAAGAGATGGGAATGGTGAAACTGCATTGCATCTCCTGGCTCGGAAGCCTTCTGCATTCTCGGGGGGAGATCAGCTTCATATATGGAACACTGTCATTAATTCAATATCATGTAAAAGAGTGGAAGACAAGAAAATTTTGAGGCAAAACAAATCTCTTAAACTAGTCAAACACCTTTGGCAGCAGGTTATAGTACAACCGCACTCCGAGATTTTAGATCTGATCAGATCTCCTTCTCCACTGCTCCTTGTTGCAGCAGAATTAGGAAACACTGTGTTCTTAACAGAGCTTATTGCCATATATCCTGATCTCATATGGGAAGTAGACGATCACAATAGGTCTATATTTCATATTGCAGTTTTACATCGCCAGGAGAATATCTTCAATCTTATATATGAGATAGGTTCAATGAAGGATTTGATTGTGCCAAATAAAGATGAGAATGATAACAACATCTTGCATTTGGCTGGAAGATTGGCACCCCCACGTCAACGCAATATTGTCGTAGGTGCAGCTCTTCAAATGCAACGAGAGCTATTATGGTTTAGGGAGGTGGAAAAGATGGTGCTACCTTCATTCAGAGAAAGGAAAAACAGAGATGGTGAAACACCCTGGGATTTGTTCACTAAGGAGCACAAAGATTTAATGAAGGAGGGGGAGAAGTGGATGAGAGGAACTGCTGCTCAATCTATGCTTGTTGCAACCCTCATAGCCACTGTTGTGTTTGCTGCAGCCCTCACTGTACCAGGCGGTAGCAATCAAGATACTGGCATTCCTGTTTTGTTGAGAAAGAAATCCTTCATATTTTTGCAGTATCGGATGCAATAG 1470 0.4245 MARVMGKEELRIDISSLAQDGHEIETGTSPEQMSPVDLISGDRDLYLAVCIPLYRAAMKGDWKTAKGIFEMFPAAVRFTITPGGDTTLHIAAAAKHVYFVEEMVKIMEPEDLELKNQYSNTAFWFAAAAGIVGIAKAMVKKNEILPMIRAYDEMTPLHVAALLGHSEMVWYLYNKTDHEQLTVSDWVKLLNACISTDLYDVALDVSSHHPTLAVERDGNGETALHLLARKPSAFSGGDQLHIWNTVINSISCKRVEDKKILRQNKSLKLVKHLWQQVIVQPHSEILDLIRSPSPLLLVAAELGNTVFLTELIAIYPDLIWEVDDHNRSIFHIAVLHRQENIFNLIYEIGSMKDLIVPNKDENDNNILHLAGRLAPPRQRNIVVGAALQMQRELLWFREVEKMVLPSFRERKNRDGETPWDLFTKEHKDLMKEGEKWMRGTAAQSMLVATLIATVVFAAALTVPGGSNQDTGIPVLLRKKSFIFLQYRMQ* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1231 489 FunFam Ankyrin repeat and death domain-containing protein 1B 38 382 - -
Vvi1g1231 489 PANTHER CASKIN 80 482 - -
Vvi1g1231 489 Pfam Ankyrin repeats (3 copies) 88 177 IPR002110 GO:0005515
Vvi1g1231 489 SMART ANK_2a 325 354 IPR002110 GO:0005515
Vvi1g1231 489 SMART ANK_2a 219 257 IPR002110 GO:0005515
Vvi1g1231 489 SMART ANK_2a 118 147 IPR002110 GO:0005515
Vvi1g1231 489 SMART ANK_2a 83 114 IPR002110 GO:0005515
Vvi1g1231 489 SMART ANK_2a 152 183 IPR002110 GO:0005515
Vvi1g1231 489 Gene3D - 50 432 IPR036770 -
Vvi1g1231 489 SUPERFAMILY Ankyrin repeat 52 370 IPR036770 -
Vvi1g1231 489 Pfam Domain of unknown function 435 482 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1231 Vvi-Chr1 17305613 17308607 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1231 53 486 Miscellaneous Gene Families AT3G09550 24.051 1.41e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1231 - - vvi:100266696 961.829