Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1230 ATGGCAAATCTGATGGAAGAAGAAGAAGAAGAGGCAAGAATAGATGTTGATTCTATCCGCAGCTCACAAGCACAAGATGGACCTGAAACTGAGGTTGTGACTTCACCTCAACCGATGTCACCTCTAGTTCTACTTTCCGGAGAAAGATACCTCTACCTCACTGTGTGCATACCTCTTTATGGAGCGGCCATGAAAGGTGACTGGAAAACTGCTGAAGGTATTTTTAAAATGTTTCCACCAGCAGTGCGCATGACCATCACACAAGGAAGGGATACAACCCTACACATAGCTGCTGCGGCAAAGCATGTCCAATTTGTTGAGGAGATGGTGAAAATGATGGAACCGAAAGACTTAGAACTTCAGAACAAATATTCAAATACTGCTCTTTGCTTTGCTGCTGCATCAGGAATAGTGAGAATTGCAGAGGTTATGGTGAAAAAGAATGAAAACCTTCCAATGATCCAAGGTGGTGGTGGAATGATACCACTCCATATGGCTGCTCTATTAGGACATAGTGAGATGGTGCGGTATCTCTACAACAAGACTGTTCATGAACATTTAGCTCCTGGTGATTGGGTTGGTCTACTTAATACATGCATCAGTACTGATCTGTATGATGTAGCCTTGGACATATTGCACCACCACCCAGCATTGGCTGTAGAAAGAGACGAGAATGATGAGACTGCATTGCATCTCCTGGCTCGGAAGCCTTCTGCATTCTCTGGAGGAGATCAGCTTCATATGTGGAACACTTTCATCAATTCAAGCAAGTTATTTTCTCTTTCTTTTGTTGAGGTTAGACAACGACAGCCCTCCGAGATTTCAGATCTGATCAGAAGACCTTCTCCACTTCTCCTTGTTGCAGCAGAATTAGGAAACACCGTCTTCTTAACAGAGCTTGTTGGCTCCTATCCTGATCTCATATGGGAAGCAGACAATGACAACAGAACTATATTTCACATTGCGGTTTTACATCGCCGTGAGAGTATCTTCAATCTTATATATGAGATAGGCTCAATGAAGGATTTGATTGTGCCATATAAAGATGATAATGATAACAACATGTTGCATTTGGCTGGACGAAAGGCACCCCTACCTCAACGCAATATTGTATCCGGAGCAGCTCTTCAAATGCAGCGAGAGCTATTATGGTTTAAGGAGGTGGAGAAGATCATGCTGCCTACATACAGAGAAAGGAAAAACAAAGATGGTAAAACACCCCGGGATTTGTTCACCAAGGAGCACAAAAATTTAATGAAGGATGGAGAGAAGTGGATGAGAGGAACAGCTGCTCAATCTATGCTTGTTGCAACGCTTATAGCCACTGTTGTGTTTGCTGCAGCCTTCACTGTACCAGGTGGTAGCAATCAGGATACAGGCATTCCTATTTTGTTGAGAAAGAAATCCTTCATGATATTTGCAGTGTCGGATGCAATAGCGTTATTTTCCTCTTCAACTTCAATACTAGTGTTCTTATCTATCTTAACCTCACGCTACGCAGAAGACGATTTTCTCGAGTCATTACCCTCTAGGTTGATGTTTGGACTCATAACACTTTTCGTTTCTATCATATCCATGATGGTAACTTTTACCATAACCTTTTTCCTAGTTTTCGGTCATGGATTTGCATGGGCCCCTATGCTTATTGCAGTATCTGCTTGTGTGCCAGTCACGCTCTATTTTTCACTGCAATATCCCCTTTTGGCAGATATATTTCGCTCTACATATGGCTCTAGGTTTCTCTTTCGACCCAGTAAGCGTATGCTCTACTAG 1773 0.4258 MANLMEEEEEEARIDVDSIRSSQAQDGPETEVVTSPQPMSPLVLLSGERYLYLTVCIPLYGAAMKGDWKTAEGIFKMFPPAVRMTITQGRDTTLHIAAAAKHVQFVEEMVKMMEPKDLELQNKYSNTALCFAAASGIVRIAEVMVKKNENLPMIQGGGGMIPLHMAALLGHSEMVRYLYNKTVHEHLAPGDWVGLLNTCISTDLYDVALDILHHHPALAVERDENDETALHLLARKPSAFSGGDQLHMWNTFINSSKLFSLSFVEVRQRQPSEISDLIRRPSPLLLVAAELGNTVFLTELVGSYPDLIWEADNDNRTIFHIAVLHRRESIFNLIYEIGSMKDLIVPYKDDNDNNMLHLAGRKAPLPQRNIVSGAALQMQRELLWFKEVEKIMLPTYRERKNKDGKTPRDLFTKEHKNLMKDGEKWMRGTAAQSMLVATLIATVVFAAAFTVPGGSNQDTGIPILLRKKSFMIFAVSDAIALFSSSTSILVFLSILTSRYAEDDFLESLPSRLMFGLITLFVSIISMMVTFTITFFLVFGHGFAWAPMLIAVSACVPVTLYFSLQYPLLADIFRSTYGSRFLFRPSKRMLY* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1230 590 ProSiteProfiles Ankyrin repeat profile. 158 181 IPR002110 GO:0005515
Vvi1g1230 590 MobiDBLite consensus disorder prediction 1 36 - -
Vvi1g1230 590 SMART ANK_2a 89 120 IPR002110 GO:0005515
Vvi1g1230 590 SMART ANK_2a 158 188 IPR002110 GO:0005515
Vvi1g1230 590 SMART ANK_2a 314 343 IPR002110 GO:0005515
Vvi1g1230 590 SMART ANK_2a 225 261 IPR002110 GO:0005515
Vvi1g1230 590 SMART ANK_2a 124 153 IPR002110 GO:0005515
Vvi1g1230 590 MobiDBLite consensus disorder prediction 18 36 - -
Vvi1g1230 590 Pfam Ankyrin repeats (3 copies) 94 181 IPR002110 GO:0005515
Vvi1g1230 590 PANTHER CASKIN 87 577 - -
Vvi1g1230 590 Pfam Domain of unknown function 424 536 IPR026961 -
Vvi1g1230 590 SUPERFAMILY Ankyrin repeat 58 359 IPR036770 -
Vvi1g1230 590 Gene3D - 56 365 IPR036770 -
Vvi1g1230 590 ProSiteProfiles Ankyrin repeat region circular profile. 158 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1230 Vvi-Chr1 17280358 17283351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1230 82 555 Miscellaneous Gene Families AT3G12360 23.017 7.63e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1230 - - vvi:100254801 1118.61