Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1227 ATGGGAAGGAGGGCTGTGAGAGGTAGGAAAGAAAAAAATTCTGATCCAGCATGGAGAGGACGTTTATGGGAGGGTGATTCAGCAGCACGTGGAGGAGGGATCTCCAGCGTTCTGGGAATATACAGGGAAGGATTAGAGTTTTTGGGAAAAGGAAGGAAGAAGAAAAAAATGGAAGGGAAGAGAAAAATGGCTGAGAGGAAGAACACTCGGGCATCTATCAGAAAAGGGATCGTGGATTACTCGGACTCATCTAATACTGACTCCTCTGGAGAAATTGATAGCATACCTCTCTTAACTGCTGAAGGAACTGAAGAAAATGATCTTGGTGATCATGCTAAGGAGAATTCCTCTCCATCTGAGACAGAAAGTGGCTCCAAATTCTGCATGAATGAAGATTTTGCAAGATGGCAGTGGATCATCCACCTTGATGTTGTGCGAGCGAATGCTGAATGGATCATTTATTCACCATCTCAGGCTGCCGTGTCAGAGATCAAGGCACGGAGATTTGCAGAGAGTGTTGGATTGAAGGATTATGATCACCTGGAGCCATATAGGATTTTCCATGCTGCTCGCTTAGTCGCCATTCTAGAAGCCTATGCACTCTATGATTTAGAAATTGGTTACTGCCAAAGGATGAGTGATTTACTCTCCCCAATAATTTCGGTGATGGAAGAGGACCATGATGCCTTCTAG 693 0.4459 MGRRAVRGRKEKNSDPAWRGRLWEGDSAARGGGISSVLGIYREGLEFLGKGRKKKKMEGKRKMAERKNTRASIRKGIVDYSDSSNTDSSGEIDSIPLLTAEGTEENDLGDHAKENSSPSETESGSKFCMNEDFARWQWIIHLDVVRANAEWIIYSPSQAAVSEIKARRFAESVGLKDYDHLEPYRIFHAARLVAILEAYALYDLEIGYCQRMSDLLSPIISVMEEDHDAF* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1227 230 MobiDBLite consensus disorder prediction 104 125 - -
Vvi1g1227 230 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 98 230 - -
Vvi1g1227 230 ProSiteProfiles TBC/rab GAP domain profile. 13 230 IPR000195 -
Vvi1g1227 230 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 43 230 - -
Vvi1g1227 230 Pfam Rab-GTPase-TBC domain 191 230 IPR000195 -
Vvi1g1227 230 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 126 230 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1227 Vvi-Chr1 17265277 17266363 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1227 - - vvi:100265048 272.707