Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1210 ATGATTTTGTGCGGGAGTCCTCATCCTTTTTTCGATAGAAAAACATCCATCGTGAGTAAGTACATTAACGAATTGGATGATTGCGAGAAGCTATTTATTCCAATGCATGACGAATGCCCTGGTCATTGGTATCTGTGCGTCATTGACTTCAAAAACTCTCATATCCAAATTTTGGATTCATTACGATCGAAGAATCAAGACAAGTTCCGGTTTCAGAGTGTCAAAACAGTGGTTGAATTTTGTCAAACGTTCTTCAAACTGTATGACATAGGGAAAGATGTCTTCCAATTCTCCATTGATTGGGCTCCTTTGATTCCGACCCAAGAGAATGGGTGGGACTATGGAGTGCATGTCATTAGACATATGCAGAGATTCAAAAATGGTGATTCGATGACGAGCTCCGACTTTTGTAATTCTATTAAAATACGTCGAGAAATAGCATGTGATTTAGTTTTACACGAGGGAAATAGAGAAAAACAAACCATTGTGGCTATTGTTTGTACAAAGACGTCGACACGAGCAATGAAAAAATTATTATTATGA 543 0.3794 MILCGSPHPFFDRKTSIVSKYINELDDCEKLFIPMHDECPGHWYLCVIDFKNSHIQILDSLRSKNQDKFRFQSVKTVVEFCQTFFKLYDIGKDVFQFSIDWAPLIPTQENGWDYGVHVIRHMQRFKNGDSMTSSDFCNSIKIRREIACDLVLHEGNREKQTIVAIVCTKTSTRAMKKLLL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1210 180 Pfam Ulp1 protease family, C-terminal catalytic domain 24 135 IPR003653 GO:0006508|GO:0008234
Vvi1g1210 180 Gene3D Adenoviral Proteinase; Chain A 10 153 - -
Vvi1g1210 180 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 17 127 - -
Vvi1g1210 180 ProSiteProfiles Ubiquitin-like protease family profile. 1 125 IPR003653 GO:0006508|GO:0008234
Vvi1g1210 180 SUPERFAMILY Cysteine proteinases 18 151 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1210 Vvi-Chr1 16917135 16917977 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1210 - - vvi:104878148 359.762