Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1207 ATGCAGGAGAATTTCGTGACAGTTGTCACTGAGGATCATGAAACAACATGTTGGGGTTGTGGGTTGCGCCTTCTTCTTGCATCTTACACTCCCATTTACAAGTGCGGATGGTGTGGAGCTATAACAAACCCAAACACATGCAAGCGTGGCGGGGTGTTGACTGTGTACCCAGTTGTTTTTTCCATCAGTTACTTTTATGGGATTATCCACTGCACCATAACAATGATCTTGTCTGTGACTACTCTTTCTACATTTAGCCTTGCAGCATTTTGTTGCGCTGGCACACCACCAAACATGACGTGGGGTAGTTATCCAGTTGTGGGGAAAGGGAGCTTGGAGAACTATACCTTTTGTCACTATTGTTCAAAGCCGAAGTCCCCTAGGACCCATCACTGCCGTTCATGTGGAATGTGTATACTGGACATGGATCATCACTGCCCATTTATTGGGAACTGTGTTGGAGCTGCGAACCACCGACACTTTATTGCCTTCCTCATTTCAGCTGTCATCAGTACGACTTATGTTGCAATCATGTCTGTATACGCAGGGTTCCACATCTGGCCACCGTTAACTTACAGATCTCTTGGCCGTTTGAATGGATCTGGTGCAGATTCAGGTTTCATAGCCATGAAGGAGATTATTATTGCCTTTTTTAGCTCAGCTGTCCATCTATCCCTGCGAGGGCTTGTCCTAGTTTATTTGTTTGTTTCAAGTGTTTCTGTGGAGATTGGTTTAAGTGTGCTGTTGTGGCAGCAACTCAGCTTCATCTATGAGGGGAAGACTTACTTGACACAGTTAAGTTCACAAGGAGATGATGCAGTTGGAGACAGGGATTGCCGGAATCTCCTCCGTTTCTTTGGCTGCCCATATTCTGCTTCCAGATATTTGACGAGTTTTTCAAATTCTATAAAGAGACACGATAAGTAA 927 0.4477 MQENFVTVVTEDHETTCWGCGLRLLLASYTPIYKCGWCGAITNPNTCKRGGVLTVYPVVFSISYFYGIIHCTITMILSVTTLSTFSLAAFCCAGTPPNMTWGSYPVVGKGSLENYTFCHYCSKPKSPRTHHCRSCGMCILDMDHHCPFIGNCVGAANHRHFIAFLISAVISTTYVAIMSVYAGFHIWPPLTYRSLGRLNGSGADSGFIAMKEIIIAFFSSAVHLSLRGLVLVYLFVSSVSVEIGLSVLLWQQLSFIYEGKTYLTQLSSQGDDAVGDRDCRNLLRFFGCPYSASRYLTSFSNSIKRHDK* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1207 308 ProSiteProfiles DHHC domain profile. 116 166 - -
Vvi1g1207 308 Pfam DHHC palmitoyltransferase 114 263 IPR001594 GO:0016409
Vvi1g1207 308 PANTHER PALMITOYLTRANSFERASE ZDHHC16 52 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1207 Vvi-Chr1 16879668 16893825 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1207 107 177 Lipid Metabolism Gene Families AT4G22750 47.887 2.04e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1207 - - vvi:100249684 627.861