Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1203 ATGGCTCCTGTATCAAGAATTGGCCTTTCTGGCCTTGCAGTCATGGGTCAAAATCTTGCCCTCAACATTGCTGAGAAAGGATTCCCAATTTCTGTTTACAACCGAACCACCTCAAAAGTCGATGAAACCGTTGAACGAGCCAAACAGGAAGGAAACCTTCCCTTATATGGCTTCCATGATCCTGAATCCTTTGTTAATTCAATCCAAAAGCCCCGTGTCATAATCATGCTTGTTAAGGCTGGGGCTCCAGTTGACCAGACCATCAAAACCCTGTCCGGTTACTTGGAGAAAGGAGACTGTATCATTGATGGTGGCAATGAGTGGTATGAGAACACGGAGAGGAGAGAGAAAGCCATGGCTGAACTGGGTCTGCTCTATCTTGGCATGGGAGTTTCAGGTGGTGAAGAGGGTGCTCGTCATGGGCCATCTTTGATGCCTGGAGGTTCATTTGAGGCTTACAAGTACATAGAAGATATCCTTCTTAAAGTGGCTGCTCAAGTTCCTGATAGTGGCCCCTGTGTGACTTACATTGGCAAAGGGGGTTCTGGAAATTTCGTTAAGATGGTTCACAATGGTATTGAATATGGTGATATGCAGCTGATTGCAGAGGCCTATGATGTGCTTAAATCAGTTGGTAAGCTCTCCAATGAGGAATTGCGTAATGTTTTCTCGGAGTGGAACAAGGGGGAGCTTTTGAGCTTCTTGATTGAGATTACTGCAGATATCTTCAGTATTAAGGATGATAAGGGAGACGGATTTTTGGTAGACAAGGTTTTGGACAAAACTGGCATGAAAGGGACTGGTAAATGGACAGTTCAGCAAGCTGCTGACCTATCAGTTGCAGCCCCAACTATAGCATCCTCTTTGGATGCAAGGTTCCTCAGTGGGCTGAAGGAAGAGCGTGTTGAAGCTGCCAAAGTTTTCAAATCAAGTGGTTTTGAAAACGTCTTGTCTGACCAGACTGTGGACAAGAAGAAGTTGATAGATGATGTGAGGCAGGCACTTTATGCATCCAAAATTTGTAGTTATGCACAGGGAATGAATCTTATCCGGGCAAAGAGCATTGAGAAGGGATGGGATTTGAAACTGGGTGAGCTTGCCAGGATTTGGAAGGGAGGTTGCATTATTCGTGCAATATTTTTGGACCGTATCAAGAAGGCCTATGATAGGAATGCAGATCTTGCTAACCTTCTTGTGGATCCAGAGTTTGCAAAGGAGATAGTTGAGCGACAGTCTGCCTGGCGAAGGGTTGTTTGCCTTGCCATCAACTCAGGCATTAGCACTCCGGGTATGTCTTCTAGTCTTGCTTACTTTGATTCCTACAGGAGGGACAGGCTGCCTGCTAATTTGGTCCAAGCTCAAAGAGATTATTTTGGAGCTCATACCTATGAGAGGATTGATACAACAGGATCTTTCCATACCGAATGGTTCAAGATTGCTCAGCAGTCAAAGATTTGA 1458 0.4506 MAPVSRIGLSGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVNSIQKPRVIIMLVKAGAPVDQTIKTLSGYLEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSGNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELRNVFSEWNKGELLSFLIEITADIFSIKDDKGDGFLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSSGFENVLSDQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNADLANLLVDPEFAKEIVERQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRDRLPANLVQAQRDYFGAHTYERIDTTGSFHTEWFKIAQQSKI* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1203 485 Gene3D - 185 443 IPR013328 GO:0016491
Vvi1g1203 485 Pfam 6-phosphogluconate dehydrogenase, C-terminal domain 183 476 IPR006114 GO:0004616|GO:0006098
Vvi1g1203 485 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE 4 482 IPR006183 GO:0004616
Vvi1g1203 485 Gene3D - 4 184 - -
Vvi1g1203 485 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 445 478 - -
Vvi1g1203 485 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 6 178 IPR006115 GO:0050661
Vvi1g1203 485 Gene3D - 446 478 - -
Vvi1g1203 485 PRINTS 6-phosphogluconate dehydrogenase signature 172 200 IPR006183 GO:0004616
Vvi1g1203 485 PRINTS 6-phosphogluconate dehydrogenase signature 70 99 IPR006183 GO:0004616
Vvi1g1203 485 PRINTS 6-phosphogluconate dehydrogenase signature 123 148 IPR006183 GO:0004616
Vvi1g1203 485 PRINTS 6-phosphogluconate dehydrogenase signature 254 281 IPR006183 GO:0004616
Vvi1g1203 485 PRINTS 6-phosphogluconate dehydrogenase signature 366 388 IPR006183 GO:0004616
Vvi1g1203 485 PRINTS 6-phosphogluconate dehydrogenase signature 5 28 IPR006183 GO:0004616
Vvi1g1203 485 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 179 IPR036291 -
Vvi1g1203 485 PIRSF 6PGD 1 484 IPR006113 GO:0004616|GO:0006098
Vvi1g1203 485 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 185 444 - -
Vvi1g1203 485 NCBIfam decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase 7 477 IPR006113 GO:0004616|GO:0006098
Vvi1g1203 485 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 3 184 - -
Vvi1g1203 485 SMART 6PGD_2 183 477 IPR006114 GO:0004616|GO:0006098
Vvi1g1203 485 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 181 478 IPR008927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1203 Vvi-Chr1 16740079 16741536 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1203 K00033 - vvi:100246134 962.985