Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1194 ATGAAGAGGCCATGTGGTCCTCTAGATATAATCAGTGACCTTCCAAACAATATAATAGAGAACATCCTAATGCGCTTGCCCATATGTGATGCAGTGGGAACAAGTATTTTGTCGAAAAAGTGGAGGTACAAATGGTTAACGCTTCCACATCTTGTAATTGACAATGCATTGGGAAAAAAATTGTTGGGAAGACAACAATCAGCCAAAAATGAACTTGTGTCAGCTGTGTATCAAGTCCTATTACTTCACAAAGGACCCATAGTTAAGTTTGTTCTGGAAGTTGATGAATTGGAAAGTTATTCTGATATCGATCATTGGATAAATTTCCTATCAAACCATGATATTCAAGAATTCACCCTTTCCCGTGCAAAGACTGAGCACTATAAATTGCCTTCTTATTTTTTTACCTTTCTACATCTCAGGCATTTGAAACTTCGTGGTTGTGCATTTAGGCCTCCACCTAGATTCAAAGGATTTAGTAAGCTTATTAGCCTCCAGCTTGAAGACATACTCATGGATGCTGAAACATTTGGTAGTCTAATCTCCAGTTGCCCATTACTTGAACAGTTGACAGTATCCGGCTACATCCCATATGACTCGCTTGAAATTAGTGCTCCTAATCTCAAAAGTTTCTCGTTTACTGGTGATTTTGGATCTATTTGTTTCAAAAATACACTACTCCTTGCAGAAGTTACCGTTGCTTTGTGTCGTGTGAATAAAAATGTAAAACATCAATCCTCTAATTTGATCAAGATTGGCCGTTCTCTACCTGCTGTTGAGAAGCTGTATCTGGAGGGTTACTTTCTGGAGTTCTTGGCATTGGGCAATGTGCCAAAGAGGCTTCCAATCCTGTTCAACAATCTCAAGGTTCTTCATTTAGATGAGATGGATTTCAGCAATTTGGATGAGATCTTATGTTCTCTTTGCTTGATTACAAGTTCCCCTAACTTAGAAGAACTTAGAGTCGTGGCATATGCTGGAGATATTGCCAGGGATGCGGTTGTAGAGTATTTTGGAACACAAAACTTGTCGCACCACTCTTTAAAGCGACTCCAGAAGGTGAAGATGGAAGAAATTTCCAATTTTGAGCCTGAACTAGAGTTTATAAAGTTTATATTGGCAAGTTCACCTTCACTTGAGGAAATGGAAGTTTTACGCAGCGAAGATACAGTGGGTGAAGATGAGCGCAAAATGTGGAAAGAGCTGATGCGATTTCGTCGAGCTTCACCAAAAGCAGAAGTCATTTACTTACAATAA 1257 0.3914 MKRPCGPLDIISDLPNNIIENILMRLPICDAVGTSILSKKWRYKWLTLPHLVIDNALGKKLLGRQQSAKNELVSAVYQVLLLHKGPIVKFVLEVDELESYSDIDHWINFLSNHDIQEFTLSRAKTEHYKLPSYFFTFLHLRHLKLRGCAFRPPPRFKGFSKLISLQLEDILMDAETFGSLISSCPLLEQLTVSGYIPYDSLEISAPNLKSFSFTGDFGSICFKNTLLLAEVTVALCRVNKNVKHQSSNLIKIGRSLPAVEKLYLEGYFLEFLALGNVPKRLPILFNNLKVLHLDEMDFSNLDEILCSLCLITSSPNLEELRVVAYAGDIARDAVVEYFGTQNLSHHSLKRLQKVKMEEISNFEPELEFIKFILASSPSLEEMEVLRSEDTVGEDERKMWKELMRFRRASPKAEVIYLQ* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1194 418 CDD F-box_AtFBL13-like 11 45 - -
Vvi1g1194 418 SMART 9598neu4hmm 344 417 IPR006566 -
Vvi1g1194 418 Gene3D Ribonuclease Inhibitor 83 393 IPR032675 -
Vvi1g1194 418 Pfam Leucine Rich Repeat 162 185 IPR013101 -
Vvi1g1194 418 Pfam F-box domain 11 43 IPR001810 GO:0005515
Vvi1g1194 418 PANTHER F-BOX PROTEIN-LIKE 9 386 - -
Vvi1g1194 418 ProSiteProfiles F-box domain profile. 8 61 IPR001810 GO:0005515
Vvi1g1194 418 SUPERFAMILY RNI-like 108 322 - -
Vvi1g1194 418 SUPERFAMILY F-box domain 7 52 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1194 Vvi-Chr1 16584583 16586022 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1194 9 213 EF-hand Containing Proteins AT5G41840 25.957 4.49e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1194 - - vri:117916037 826.239