Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1193 ATGGATGATGCTCCAAAACTAGATTTGATAAGTAATCTGCCTTTAAGCATTATAGAGAGCATCCTTGTCCGGTTGCCTATAAGGGAAGCCGTGAGAACAAGTATATTGTCAAGTAAATGGAGGTACAGATGGTCAGGAATTACAGATCTCGTATTCGAAGATGACCTATTTCTTCTCAATGACAAGCTCAAAAAGTTTATCACTCAGGTTCTCCTTCTTCATGCTGGACCAATTCACAAGTTTCAGATTACTACTTCCAACTTACGAATCTGTCCTGATATTGACCAATGGATTCTTTTCCTTTCAAGAAATGATGTTAAAGAAATCCTTCTTGAATTAGGAGAGTGCGAGTGGTTTACTGTTCCTTCTTGTCTGTTCTCTTGTCAAAAATTGACTCGCTTGGAGTTGGTTCGATGTGAATTACACCCACCCCCGACTTTTAAAGGATTCTTGCATTTGAAGATTCTCAATCTTCATCAAGTTTCAATTACCTGTGAAGCTATTCAAAGTCTTGTTTCTAGTTGCCCTCTCCTAGAGTGTTTGTCATTGTCGTATTTCGATAGTTTAGCTCTCAATATTTCTGCTCCAAATCTCAAATACTTGTTCCTAGAAGGCGAATTTAAAGAAATCTGTCTTGAAAATACTCCGGGTTTGGTTTCTGTAACTGTGGCTATGTATATGTCTGATGACGTTGTTGAACACTTTGAGCAAAGTTCGAGTTGCAATTTTATCAAATTTTTTGGCGGTGCACCTCATCTTGAACGGCTCATTGGGCACATATACTTTACAAAGTTTTTGAGTATAGGTAATGAACTAGGAAGACATCCAATTACATACCACCATCTAAAGAATATTGAACTGTATCAAGTAAGTTTTGAAGACATAAAGGAGATACTGGTCATTCTTCGCTTGATAATATACTCTCCTAATTTAGAAGAACTTCAAATCTCGGGTTCCTCAAACACATCAGTGTCACCAGAAGTACTCGATTTGGATTTTTGGGAGAATGAATGCCCTTTAGATTGTGCATTCAAATGCCTTCAAACTGTGAAGATGACAGACATTTCTGGTCTGCCACATGAGATGAGATTTATCAAATTTTTACTTGAAAACTCACCAATCCTTGAGATAATGAGCATTACACCCTCTGTATATGCCATAGAAGGAAGGATGCATATGGTAACAGAGCTGCTGGAGTTCCGACGAGTTTCTCCCCAAGCAAAAATCAAATTTGTTCTAGATTGA 1245 0.3783 MDDAPKLDLISNLPLSIIESILVRLPIREAVRTSILSSKWRYRWSGITDLVFEDDLFLLNDKLKKFITQVLLLHAGPIHKFQITTSNLRICPDIDQWILFLSRNDVKEILLELGECEWFTVPSCLFSCQKLTRLELVRCELHPPPTFKGFLHLKILNLHQVSITCEAIQSLVSSCPLLECLSLSYFDSLALNISAPNLKYLFLEGEFKEICLENTPGLVSVTVAMYMSDDVVEHFEQSSSCNFIKFFGGAPHLERLIGHIYFTKFLSIGNELGRHPITYHHLKNIELYQVSFEDIKEILVILRLIIYSPNLEELQISGSSNTSVSPEVLDLDFWENECPLDCAFKCLQTVKMTDISGLPHEMRFIKFLLENSPILEIMSITPSVYAIEGRMHMVTELLEFRRVSPQAKIKFVLD* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1193 414 SMART 9598neu4hmm 341 412 IPR006566 -
Vvi1g1193 414 Gene3D Ribonuclease Inhibitor 80 381 IPR032675 -
Vvi1g1193 414 Pfam Leucine Rich Repeat 153 176 IPR013101 -
Vvi1g1193 414 PANTHER F-BOX PROTEIN-LIKE 9 382 - -
Vvi1g1193 414 Pfam FBD 337 380 IPR006566 -
Vvi1g1193 414 Pfam F-box domain 10 46 IPR001810 GO:0005515
Vvi1g1193 414 SUPERFAMILY RNI-like 98 376 - -
Vvi1g1193 414 SUPERFAMILY F-box domain 6 50 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1193 Vvi-Chr1 16556925 16558437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1193 8 239 EF-hand Containing Proteins AT5G41840 25.694 7.51e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1193 - - vvi:100244393 819.305