LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g1191	ATGGCCTTGCCAGTCTCAGCAATTGGATTTGAAGGTTATGAAAAGAGGCTAGAGATATCATTTTCTGAACCAGGCATCTTTTCTGATCCTGAAGGAAGGGGTCTCCGATCCCTGTCGAGAGCCCAGTTGGATGAGATTCTTGAACCAGCTGAGTGCATTATAGTTGGTTCATTGTCAAATGATATTGTTGATTCCTATGTCTTGTCTGAGTCTAGCCTCTTTGTTTACCCTTACAAGATCATCATCAAAACCTGTGGGACAACAAAGCTGCTTCTTTCAATCCCACCCATCTTGAAGTTGGCTGACGCCCTCTCCCTCTCTGTAAGTTGTGTGAGGTATACTCGTGGGAGCTTCAATTTTCCTGGTGCTCAGCCATATCCTCATCGTCACTTCTCAGAAGAAGTGGCCGTCCTTGACAGCTATTTTGGGAAGCTTGGTTCAGGTAGCAAGGCTTATGTGATGGGCAGTTCTGACAAATCACAGAAATGGCATGTGTACTCTGCTTCTGCAGAAGTGAGGAGCGCCTGTGACCCTGTTTATACTCTGGAGATGTGCATGACTGGTTTGGACAGGGAGATGGCTTCTGTATTCTACAAAACCCACTCAAGCTCAGCAGTTAAAATGACTGACACTTCTGGTATTAGAAAGATTCTTCCAGATTCTGAAATATGTGATTTTGAATTTGATCCATGTGGTTATTCCATGAATGCCATTGAAGGAGCTGCAATTTCCACCATTCATGTCACGCCTGAAGATGGTTTTAGTTATGCTAGCTTTGAAACGATGGGATATAATCCAAAAGATGTGAACCTGAGCCAGCTGATTGAAAGGGTGTTGTCTTGTTTCCAACCGAATGAGTTCTCTGTAGCGGTGCATGCTGACATCTCGGGTAAGTTACTTGAGCGAAATTGCCTTCTGGATGTAAAGGGATACTGTTGTGAAGAGAGAAGCAACGAAGAACTTGGTATGTGTGGTTCCATTGTATACCATAGGTTCATGAAGACTGAGGGGTTGGTGTCTCCTAGATCAATTCTGAAATGCTGCTGGAAAGAGGAAGAAGAAGAAGAAGAAGAAAAGGAATAG	1083	0.4386	MALPVSAIGFEGYEKRLEISFSEPGIFSDPEGRGLRSLSRAQLDEILEPAECIIVGSLSNDIVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPILKLADALSLSVSCVRYTRGSFNFPGAQPYPHRHFSEEVAVLDSYFGKLGSGSKAYVMGSSDKSQKWHVYSASAEVRSACDPVYTLEMCMTGLDREMASVFYKTHSSSAVKMTDTSGIRKILPDSEICDFEFDPCGYSMNAIEGAAISTIHVTPEDGFSYASFETMGYNPKDVNLSQLIERVLSCFQPNEFSVAVHADISGKLLERNCLLDVKGYCCEERSNEELGMCGSIVYHRFMKTEGLVSPRSILKCCWKEEEEEEEEKE*	361

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g1191	360	FunFam	S-adenosylmethionine decarboxylase proenzyme	2	70	-	-
	Vvi1g1191	360	SUPERFAMILY	S-adenosylmethionine decarboxylase	13	334	IPR016067	GO:0004014\|GO:0008295
	Vvi1g1191	360	ProSitePatterns	S-adenosylmethionine decarboxylase signature.	65	75	IPR018166	GO:0004014
	Vvi1g1191	360	Gene3D	-	71	335	-	-
	Vvi1g1191	360	PIRSF	SAM_decarbox_euk	1	337	IPR001985	GO:0004014\|GO:0006597\|GO:0008295
	Vvi1g1191	360	PANTHER	S-ADENOSYLMETHIONINE DECARBOXYLASE	5	333	IPR001985	GO:0004014\|GO:0006597\|GO:0008295
	Vvi1g1191	360	Pfam	Adenosylmethionine decarboxylase	9	332	IPR001985	GO:0004014\|GO:0006597\|GO:0008295
	Vvi1g1191	360	Gene3D	-	1	70	-	-
	Vvi1g1191	360	FunFam	S-adenosylmethionine decarboxylase proenzyme	71	335	-	-
	Vvi1g1191	360	NCBIfam	S-adenosylmethionine decarboxylase proenzyme	10	335	IPR001985	GO:0004014\|GO:0006597\|GO:0008295

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g1191	Vvi-Chr1	16536015	16537097	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi1g1191	K01611		-	vvi:100240686	699.123