Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1178 ATGCACGCGTATTTTTGTGTAGCTCCAGGATCAAGATCATCTCCCCTTGCTATTGCTGCTTCCACTCATCCCCTTACAACTTGTATCGCATGCTTTGATGAACGCTCTCTTGCATTTCATGCTCTTGGTTATGCAAGAGGATCTCATAAACCAGCAGTGGTCATAACATCATCGGGCACTGCAGTATCAAATCTTCTTCCTGCTGTTGTTGAGTCTAGTCAAGGTTTTGTACCTCTTCTATTACTTACTGCAGATCGTCCTCCAGAGCTGCATGATGCTGGAGCTAACCAGGCAATTAATCAGGTCAATCATTTTGGTTCCTTTGTGAGGTTTTTCTTTGGTCTTCCTGTTCCCACTGATCATATTCCTGCTCGGATGATACTTACCACACTTGACTCTGCTGTTTATTGGGCAACATCTTCACCATGTGGCCCTGTTCATATAAACTGTCCTTTTAGAGAGCCCCTGGAAAATAGTCCAAAAGAATGGATGTTAAGCTGTTTAAAAGGATTAGATTCTTGGATGTCAAGTGCTGAACCTTTTACCAAGTATATTCAGTTGCAGCATTCCCATGCACCTGATGATTCTCAAGGTCAAATGGCAGAGGTTATAGAAGTGATTCAAGGGGCTAAACGAGGTCTTTTACTTATAGGTGCGATCACTACAGAGGATGATATTTGGGCAGCTCTTCTCCTGGCTAAGCACCTTTGTTGGCCAGTTGTAGCTGACATCTTGTCAGGTTTACGGTTGAGAAAGCTTTCTACTTCTTTTCAAGAAATTGAAGACAATGTTTTATTTCTTGATCATCTTGATCATGCTTTACTCTCAGATTTTGTCAGGGTTTGGGCACAAGCTGATGTCATTATTCAGATTGGGAGTAGAATAACGAGTAAACGTATATCTCAGATGATAGAGGATTGTTTTCCATGCTCATATATCATGGTTGACAAGCATCCATGTCGCCATGATCCTTCACATCTCTTAACACATAGGATCCAGAGTACCATCACTCAGTTTGCTGATTGCTTATGTAAAGCTCAGTTTCCACTTATGAGCAGCAAATGGAGTGTGTCTTTGCGGGCATTGGATATGATGGATTTTGAATGGAGAATCGAATGGTTGGGAGAAAGGAATCGGAAATGTCTTCTTCTGGGGGTGTTAGGATTTGGACGAGTTGTGTGGAGACTGCCAGGTATTGAGGATGCCAAGGCCAGGAACAAGCAAAAACTGGCCACATGTACACTGAAGTGGCCATGCATGCGGATTGCATGCACATGGGAAGAAGCTTGTAGGAAATGA 1299 0.428 MHAYFCVAPGSRSSPLAIAASTHPLTTCIACFDERSLAFHALGYARGSHKPAVVITSSGTAVSNLLPAVVESSQGFVPLLLLTADRPPELHDAGANQAINQVNHFGSFVRFFFGLPVPTDHIPARMILTTLDSAVYWATSSPCGPVHINCPFREPLENSPKEWMLSCLKGLDSWMSSAEPFTKYIQLQHSHAPDDSQGQMAEVIEVIQGAKRGLLLIGAITTEDDIWAALLLAKHLCWPVVADILSGLRLRKLSTSFQEIEDNVLFLDHLDHALLSDFVRVWAQADVIIQIGSRITSKRISQMIEDCFPCSYIMVDKHPCRHDPSHLLTHRIQSTITQFADCLCKAQFPLMSSKWSVSLRALDMMDFEWRIEWLGERNRKCLLLGVLGFGRVVWRLPGIEDAKARNKQKLATCTLKWPCMRIACTWEEACRK* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1178 432 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 159 IPR012001 GO:0030976
Vvi1g1178 432 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 4 365 - -
Vvi1g1178 432 NCBIfam 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 5 348 IPR004433 GO:0009234|GO:0030976|GO:0070204
Vvi1g1178 432 Pfam Middle domain of thiamine pyrophosphate 168 363 IPR032264 -
Vvi1g1178 432 Gene3D - 2 178 - -
Vvi1g1178 432 Gene3D - 193 366 - -
Vvi1g1178 432 CDD TPP_PYR_MenD 4 152 - -
Vvi1g1178 432 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 4 163 IPR029061 -
Vvi1g1178 432 SUPERFAMILY DHS-like NAD/FAD-binding domain 145 355 IPR029035 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1178 K14759 - vvi:100241089 739.954