Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1167 ATGTCATCATCCTCCAACTACTACGCTTCTTTACTCAAACTCTGCTGTGAATCCCAGAACCAAACCCAAGCCAAGAAACTCCACTGCCTCATACTCAAAACCATTAAACAACCTGAAACCTTTTTATCAAACAATCTCATCACTGCTTACTATAAACTAGGCAATTTAGCATATGCCCACCACGTGTTCGATCATATTCCTCAACCAAATCTCTTCTCATGGAACACAATCCTCTCCGTTTATTCAAAACTGGGACTTCTTTCTCAGATGCAACAAATCTTTAATCTAATGCCATTTCGAGATGGGGTCTCTTGGAATTTGGCTATTTCGGGTTATGCTAATTATGGCTCTTGTAGTGATGCGGTTAGAGTTTATAAGTTGATGTTGAAGGATGCAGCCATGAATTTGAATCGGATTACATTTTCAACAATGCTTATATTGTGTTCAAAATTTCGGTGTGTAGATTTGGGTAGGCAAATTAATGGGCAAATACTGAAATTTGGTTTTGGGTCTGATGTATTTGTGGGTAGTCCTTTGGTGGACATGTATACGAAATTGGGGTTGATCTATGATGCAAAGCGGTACTTTGATGAAATGCCGGAGAGGAATGTAGTTATGTGTAATACAATGATCACTGGGCTTATGCGGTGTGGGATGATTGAAGAGTCTCAGCGTTTGTTTTGTGGCCTAAAAGAGAGAGATTCGATTTCTTGGACGATCATGATTACAGGGCTAATGCAGAATGGGTTGGAGAGAGAAGCACTTGATATGTTCAGAGAGATGCGATTGGCAGGGTTTGCAATGGATCAGTTTACATTTGGAAGTGTCTTGACTGCTTGTGGGAGTCTTTTGGCCTTAGGAGAAGGGAAACAGATTCATGCGTATGTAATAAGGACTGACCATAAGGATAATGTGTTTGTGGGAAGTGCTCTTGTTGACATGTATTCCAAGTGTAGAAGCATAAAATCTGCAGAAACAGTATTCAAGAGAATGCCCCAAAAGAATGTCATTTCATGGACTGCGATGCTGGTGGGTTATGGCCAGAATGGTTTCAGTGAAGAAGCTGTTAAGATTTTCTTTGAGATGCAGAGAAATGGGGTTGAGCCAGATGATTTTACTCTAGGAAGTGTTATTAGCTCATGTGCTAATCTGGCAAGCTTAGAAGAGGGTGCCCAATTTCATTGTCGAGCCTTGGTTTCTGGCTTGATTTCTTTTATTACCGTATCTAATGCGCTTATTACCTTGTATGGTAAATGTGGAAGCACAGAAAATTCCCATCGGTTGTTCACTGAAATGAACATCAGAGATGAAGTTTCTTGGACTGCATTGCTTGCAGGGTATGCCCAGTTTGGGAAAGCCAATGAGACAATTGGTTTGTTTGAAAGAATGTTGGCACATGGCTTGAAACCAGATGGAGTTACATTTATTGGGGTCCTTTCAGCTTGCAGTAGGGCAGGACTAGTGGAGAAAGGACTTCAGTATTTTGAATCAATGATAAAAGAACATGGTATTATGCCAATTGTTGATCACTGCACTTGCATCATTGATCTGCTTGGCCGAGCTGGAAGGTTAGAAGAAGCAAGAAATTTTATAAATAATATGCCTTGCCATCCTGATGTGGTTGGATGGGCTACCTTGCTGAGCTCATGTAGAGTTCATGGTGACATGGAAATTGGGAAATGGGCAGCTGATTCTCTAATTGCATTAGAGCCTCAGAACCCTGCAAGCTATGTCTTGCTTTCAAGTCTCTATGCTTCCAAAGGGAAGTGGGACAAAGTGGCTCAGTTAAGAAGAGGAATGAGAGATAAGCGAGTAAGAAAGGAACCGGGATATAGTTGGATTAAATATAAAGGCAAAGTGCATGTTTTCTCAGCTGATGACCAGTCAAGTCCATTTTTAGGTCAGATATATGCTGAGTTGGAAAAACTGAATTATAAAATGATAGAAGAGGGATATGTTCCTGATATGAGTTCTGTTCTTCATGATGTTGAGGAATCTGAGAAGATAAAAATGCTTAACCACCATAGCGAAAAACTTGCTATTGCTTTTGGGTTGATTTTTGTTCCTCCTGGCCTGCCCATACGGGTAATTAAGAACCTGAGAGTCTGTGGTGATTGCCACAATGCAACTAAATTCATTTCCAAGATAACACAGAGAGAGATACTTGTAAGGGATGCAGTTCGTTTCCATTTGTTTAAAGATGGGACATGTTCATGTGGGGATTTTTGGTGA 2232 0.4055 MSSSSNYYASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDFW* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1167 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Vvi1g1167 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Vvi1g1167 743 NCBIfam pentatricopeptide repeat 438 471 IPR002885 -
Vvi1g1167 743 NCBIfam pentatricopeptide repeat 103 130 IPR002885 -
Vvi1g1167 743 NCBIfam pentatricopeptide repeat 473 504 IPR002885 -
Vvi1g1167 743 NCBIfam pentatricopeptide repeat 236 269 IPR002885 -
Vvi1g1167 743 NCBIfam pentatricopeptide repeat 337 370 IPR002885 -
Vvi1g1167 743 Gene3D Tetratricopeptide repeat domain 13 151 IPR011990 GO:0005515
Vvi1g1167 743 Gene3D Tetratricopeptide repeat domain 152 287 IPR011990 GO:0005515
Vvi1g1167 743 Gene3D Tetratricopeptide repeat domain 288 401 IPR011990 GO:0005515
Vvi1g1167 743 Pfam PPR repeat 72 98 IPR002885 -
Vvi1g1167 743 Pfam PPR repeat 205 233 IPR002885 -
Vvi1g1167 743 Pfam PPR repeat 410 432 IPR002885 -
Vvi1g1167 743 Pfam PPR repeat 179 204 IPR002885 -
Vvi1g1167 743 Pfam PPR repeat 511 534 IPR002885 -
Vvi1g1167 743 Pfam PPR repeat 103 130 IPR002885 -
Vvi1g1167 743 FunFam Pentatricopeptide repeat-containing protein 288 391 - -
Vvi1g1167 743 FunFam pentatricopeptide repeat-containing protein At1g20230 isoform X2 158 287 - -
Vvi1g1167 743 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 8 99 IPR046960 GO:0003723|GO:0009451
Vvi1g1167 743 FunFam Pentatricopeptide repeat-containing protein At3g49710 13 155 - -
Vvi1g1167 743 Gene3D Tetratricopeptide repeat domain 407 648 IPR011990 GO:0005515
Vvi1g1167 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 506 IPR002885 -
Vvi1g1167 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 101 131 IPR002885 -
Vvi1g1167 743 FunFam Pentatricopeptide (PPR) repeat-containing protein 499 662 - -
Vvi1g1167 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 233 IPR002885 -
Vvi1g1167 743 FunFam Putative pentatricopeptide repeat-containing protein 393 489 - -
Vvi1g1167 743 Pfam PPR repeat family 436 483 IPR002885 -
Vvi1g1167 743 Pfam PPR repeat family 334 383 IPR002885 -
Vvi1g1167 743 Pfam PPR repeat family 234 280 IPR002885 -
Vvi1g1167 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Vvi1g1167 743 Pfam E motif 553 615 IPR046848 -
Vvi1g1167 743 Pfam DYW family of nucleic acid deaminases 651 743 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1167 Vvi-Chr1 15898501 15900732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1167 92 743 Glycoside Hydrolase AT3G49170 37.216 2.39e-149 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1167 - - vvi:100242829 1498.8