Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1163 ATGTGGAGGAATTTAGCAAAACATGCCTACACGAGGAGGCTGCAACTCTCCTCTCAACACTCTTCCTTCTCTCCTTCTAATTGCACCAGTCGTTTTTATTTCCCTGATAAAGCCAGAGCTCTTGAGTCCCAAGACCATGTAAATTCTTTGCGCCCAGTTGCAGGTCTTAGGCGAATTGGGGTACTATCTTTTCAGCAAGATGAATTGGGAAGACCCGGTTTTGGGGTTACCAAAACCCCTGTTAATTTTTTCGGATTGTTCGGTTATCAGAAAGGTTATGCGAGTGCTGCAGAGGCCATTGCTTCAGAAGAAGATATGTCAGGGGTGGATGAAGTTCAAGAATTAGTGGAGGAAGTGAACAAAGGAGACAAGCTCGAAAAGCAGCCAAAATTGATAGGTGGGGTGGCGCAAGGCAAGCACAACGTGCTGCGGAGGCGACAAATAAAGATGGAGACAGAGGCGTGGGAAGAGGCAGCTAAAGAGTACCGAGAGCTTCTATCGGACATGTGTGAGCAAAAGCTCGCCCCTAATTTGCCATACATAAAATCTTTATTCCTCGGATGGTTTGAGCCGTTGAGGGATGTAATTGCTGCTGAGCAAGACTTGTGCAAGCAAGGGAAGAACCGGGCTGCCTATGCCCCCTATTTTGATCATTTACCAGCGGATATGATGGCAGTTATTACAATGCATAAGTTGATGGGGTTGTTGATGACAGGGGAAGGCAATGGCAGTGCTAGAGTAGTTCAAGCTGCTTGCCACATTGGTGAAGCCATTGAACATGAGGTGAGGATACAGAGGTTTATGGAGAAGACCAAGAAAAAGAGTGCATCCAGCAACAATCCTGATGGTGGATCAAATCCTGTGACAAAAGAACAAGAGAAACTTCGGAAAAAGGTTTCTATGTTGATGAAAAAGCAAAAGCTGCAGCAAGTGAGGCAAATAGTGAAACGACAAGACGACTCAAAACCTTGGGGCCAAGATGCTAATGTTAAGGTTGGGTCTCGTTTGATTGAGCTATTAATAGAAACAGCCTACATTCAACCTCCAGCTGATCAGTTAGGAGATGGGCCACCTGATATTCGTCCTGCATTTGTTCACACCCTCAAAACTGTCATAAAAGAAACACAGAAAGGCACCAGGAGATATGGAGTAATAGAATGTGACCCACTAGTTCGCAAAGGTTTAGAAAAAACTGCTAGGCACATGGTTATTCCTTATATGCCAATGTTGGTGCCTCCACTAAACTGGACAGGGTATGACAAAGGAGCGTACTTGTTCTTACCATCATATGTCATGCGCATTCATGGGGCAAGACAACAACGTGAAGCAATTAAAAGGGCTCCAAGGAAGGCATTGGAACCTGCATTTGAGGCCCTTAACACCCTTGGCAATACTAAATGGAGAATAAATAAGAGGGTACTTGGTGTCATAGACAGAATATGGGCTAGTGGAGGTCGTCTTGCTGATTTGGTTGACCGCGAAGATGTTCCTTTACCAGAGGAACCAGACACAGAAGATGAAGCAGAAATCAGGAAATGGAAGTGGAAAGTCAGATCTGTGAAAAAGGAAAATAGTGAGAGGCATTCACAGCGGTGCGATATAGAACTTAAACTTGCTGTGGCTCGAAAGATGAAGGATGAAGATGGCTTCTTCTATCCCCACAACCTTGATTTTCGAGGTCGTGCCTACCCCATGCATCCATATTTAAACCATCTTGGCTCTGATTTGTGCCGAGGTATCCTGGAGTTTGCAGAGGGACGCCCTCTTGGGAAGTCAGGCTTACGTTGGCTGAAGATACATTTAGCAAATGTATATGCTGGTGGAGTGGACAAGTTATCATACGAGGGTCGGGTGGCATTTACTGAGAATCATTTGGAAGATATCTTTGATTCCGCAGACAGACCTCTGGAAGGAAGACGCTGGTGGTTGTCTGCTGAGGATCCTTTCCAATGCTTGGCAACATGTATTAATCTCTCAGAAGCATTAAGAAGCTCCTCTCCAGAGACTACTATTTCACATATGCCTGTCCACCAGGATGGTTCGTGCAATGGCTTACAACACTATGCTGCGCTTGGAAGGGACAAGTTAGGAGCAGCTGCTGTGAATCTTGTTGCGGGAGAGAAGCCTGCAGATGTTTACTCAGGAATTGCTGCCAGAGTTCTTGATATCATGCAGAGAGATGCACAGAAGGATCCTGCTACTGAACCAAATGCCTTGCGTGCTAGACTTTTAATCAGTCAGGTGGATAGGAAACTGGTGAAGCAGACAGTGATGACATCAGTATATGGAGTTACTTATATTGGTGCTCGTGACCAAATCAAGAGGAGATTAAAAGAACGTTGTGCCATTGCAGATGAGGGAGAGGTGTTTAGTGCATCTTGTTATGCGGCTAAAACCACCTTGACTGCTTTAGGAGAGATGTTTGAAGCTGCACGTAGTATCATGAGCTGGCTTGGTGACTGTGCAAAGGTGATAGCTTCTGAGAATCATCCAGTGCGGTGGAATACTCCTTTGGGACTTCCTGTTGTGCAACCCTACCGCAAATTAGGAAGGCATCTTATTAAGACTTCACTTCAGGTGTTGAGCCTACAACGAGAAACTGATAAGGTCATGGTTAAGCGTCAGAGGACAGCTTTTCCTCCGAATTTCGTTCACTCACTTGATGGTTCCCACATGATGATGACTGCTGTTGCTTGCCAAAAGGCAGGCTTAAATTTTGCAGGAGTCCATGATTCATACTGGACACATGCATGTGATGTTGACGAAATGAACAGGATACTTAGAGAAAAGTTTGTTGAACTCTACGGGATGCCAATACTTGAAAATTTGTTGGAGGGCTTCCAAAAGTCATTTCCTACATTAAATTTTCCGCCCTTACCAGAGCGAGGGGACTTCGATCTGAGGGAGGTTTTGGAATCTCCTTATTTCTTCAATTAG 2937 0.4505 MWRNLAKHAYTRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLRRIGVLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIASEEDMSGVDEVQELVEEVNKGDKLEKQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEGFQKSFPTLNFPPLPERGDFDLREVLESPYFFN* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1163 978 Gene3D - 587 665 - -
Vvi1g1163 978 Pfam DNA-directed RNA polymerase N-terminal 146 464 IPR029262 -
Vvi1g1163 978 SMART RPOL_N_2 145 464 IPR029262 -
Vvi1g1163 978 FunFam DNA-directed RNA polymerase 587 665 - -
Vvi1g1163 978 SUPERFAMILY DNA/RNA polymerases 131 978 IPR043502 -
Vvi1g1163 978 Gene3D - 123 464 IPR037159 -
Vvi1g1163 978 Gene3D - 465 547 IPR024075 GO:0003899
Vvi1g1163 978 MobiDBLite consensus disorder prediction 269 293 - -
Vvi1g1163 978 FunFam DNA-directed RNA polymerase 465 547 - -
Vvi1g1163 978 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 2. 748 762 IPR002092 GO:0003677|GO:0003899|GO:0006351
Vvi1g1163 978 FunFam DNA-directed RNA polymerase 126 463 - -
Vvi1g1163 978 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 112 978 IPR002092 GO:0003677|GO:0003899|GO:0006351
Vvi1g1163 978 FunFam DNA-directed RNA polymerase 696 885 - -
Vvi1g1163 978 Pfam DNA-dependent RNA polymerase 587 978 IPR046950 -
Vvi1g1163 978 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 1. 675 686 IPR002092 GO:0003677|GO:0003899|GO:0006351
Vvi1g1163 978 Gene3D - 696 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1163 Vvi-Chr1 15828712 15857308 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1163 K10908 - vvi:100263361 1959.11