Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1162 ATGGCTCCTGTTCTGAGCAGAAGCTTGGCCACTGCGCCTCTCACTTCTTTTCCACTCAACAATATCAATAACAACAGGAGGGTCTTGAATTTGAGAAATACTTTTGTACCACTGAATGGCCTCAGAAAGGGATTTTCTTGTAGTGGGTTGAAATGGAAGCTAGAGAAGAGAGGCAGTCGCGTGGGTGTTCGCTGCGAGGCTGGTGTTGCTGAGAAAGAAGCTCCCGATACGCCCGGAGAGAAGTTCGAATACCAGGCCGAGGTCAGTCGCCTACTTGATTTGATAGTCCATAGTCTATACAGCCACAAGGAAGTATTTCTAAGAGAGCTCGTGAGTAATGCAAGTGATGCTCTTGATAAGTTGAGATTCCTAAGTGTGACAGAGCCCTCTCTACTTGGAGATGCTGGTGAGCTAGAAATACGCATAAAACCTGATCCCGATAATGGAACCATTACTATAACAGATACTGGTATTGGAATGACCAAGGAAGAGCTCATTGACTGTCTTGGAACTATAGCTCAGAGTGGTACTTCAAAATTCTTGAAGGCTCTTAAGGAAAATCAGGATCTCGGGGCTGATAATGGGTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCATTTCTGGTTGCTGAGAAGGTGACAGTGTCAACGAAGAGCCCACGGTCAGAAAAGCAATATGTTTGGGAAGCTGTAGCTGACAGTAGTTCTTATGTGATCAGAGAAGAAACTGATCCTGAGAAGTCCCTGCCTCGTGGAACACAAATCACCCTCTACTTAAGGCCAGATGACAAATATGAATTCTCAGAGCCATCCAAGATTCAGAGTTTGGTGAAGAACTACTCACAGTTCGTTTCCTTCCCCATCTATACATGGCAAGAGAAATCAAGGACTGTTGAGGTGGAAGAGGAGGAAGAACCAAAAGAGGGAGAAGAAGCAAAACCAGAGGATCAGAAGAAAAAGAAGAAGACTATAACTGAGAAATACTGGGACTGGGAACTAGCCAATGAAACAAAACCTATTTGGATGCGGAATCCAAGGGAAGTGGAAAAGGATGAGTACAACGATTTCTACAAGAAAACTTTTAATGAGTTCTTGGATCCACTTTCACACATCCACTTCACCACAGAGGGTGAGGTTGAATTTAGGAGTATTCTTTATATTCCTGGAATGGGACCTCTTAACAATGAGGATGTAATGAATCCCAAAACAAAGAACATACGTTTGTATGTGAAGCGTGTATTCATTTCAGATGACTTTGATGGTGAGCTGTTTCCACGGTACTTAAGCTTTGTGAAAGGTGTGGTGGATTCAGACGACCTTCCTCTCAATGTTTCGCGGGAGATTCTGCAAGAAAGCCGAATTGTCAGAATTATGAGAAAGAGACTTGTCAGGAAAACGTTTGACATGATACAAGAGGTTTCTGAAAGTGAAAACAAAGAGGATTACAAAAAATTCTGGGAGAACTTTGGAAGGTTTCTAAAGTTAGGATGCATCGAGGACACTGGGAATCACAAGCGCATAACACCACTATTAAGGTTCCACACTTCCAAAAGTGAGGAGGAATTGACTAGCTTAGATGATTATGTTGAAAACATGGGTGAGAATCAAAAGGCTATCTACTACTTGGCAACAGATAGCTTAAAAAGTGCAAAGACTGCACCATTCTTAGAGAAGTTGGTTCAAAAGGATATTGAGGTTCTATATCTAATTGAGCCTATTGATGAAGTTGCCATCCAGAACCTGCAGACCTACAAAGAAAAGAAATTTGTTGACATTAGCAAGGAGGATTTGGAGCTTGGTGATGATGATGAAGTCAAAGAACGGGAAACCAAACAAGAATATAATCTTCTCTGTGATTGGATAAAGCAACAGCTTGGTGATAAGGTTGCAAAAGTCCAAGTCTCAAAGCGTCTAAGCTCATCCCCTTGTGTTCTTGTTTCTGGCAAGTTTGGATGGTCTGCTAATATGGAAAGGTTAATGAAAGCACAGGCTCTTGGAGACACTTCCTCTTTGGAGTTCATGAGGGGAAGGAGAATATTGGAGATCAATCCAGATCATCCCATCATTAAAGACCTAAATGCTGCATGCAAGCTAGAGCCTGATAGCAGTGAGGCCAGGAGAGCTGTGGACCTTTTATATGATACAGCATTGATTTCCAGTGGATTCTCTCCTGACAGCCCAGCTGAGTTGGGAAACAAGATATATGAGATGATGTCAATGGCTCTTGGAGGACGATGGGGACGAGCAGAAGGGGAAGGGGAAGAGGAAGAGGAAGAGAAAGAGGCTGAAGTGGTGCAAGAGGATGCTACAGAATCCGAGACACAAGTGATTGAACCATCAGAAGTTAGGGCAGAGAGCGATCCTTGGAATGATTAA 2379 0.4296 MAPVLSRSLATAPLTSFPLNNINNNRRVLNLRNTFVPLNGLRKGFSCSGLKWKLEKRGSRVGVRCEAGVAEKEAPDTPGEKFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGELEIRIKPDPDNGTITITDTGIGMTKEELIDCLGTIAQSGTSKFLKALKENQDLGADNGLIGQFGVGFYSAFLVAEKVTVSTKSPRSEKQYVWEAVADSSSYVIREETDPEKSLPRGTQITLYLRPDDKYEFSEPSKIQSLVKNYSQFVSFPIYTWQEKSRTVEVEEEEEPKEGEEAKPEDQKKKKKTITEKYWDWELANETKPIWMRNPREVEKDEYNDFYKKTFNEFLDPLSHIHFTTEGEVEFRSILYIPGMGPLNNEDVMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQEVSESENKEDYKKFWENFGRFLKLGCIEDTGNHKRITPLLRFHTSKSEEELTSLDDYVENMGENQKAIYYLATDSLKSAKTAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTYKEKKFVDISKEDLELGDDDEVKERETKQEYNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIIKDLNAACKLEPDSSEARRAVDLLYDTALISSGFSPDSPAELGNKIYEMMSMALGGRWGRAEGEGEEEEEEKEAEVVQEDATESETQVIEPSEVRAESDPWND* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1162 792 SUPERFAMILY HSP90 C-terminal domain 618 739 IPR037196 -
Vvi1g1162 792 FunFam Heat shock protein 90 509 595 - -
Vvi1g1162 792 ProSitePatterns Heat shock hsp90 proteins family signature. 100 109 IPR019805 GO:0005524|GO:0006457|GO:0051082
Vvi1g1162 792 MobiDBLite consensus disorder prediction 753 769 - -
Vvi1g1162 792 Gene3D - 67 310 IPR036890 -
Vvi1g1162 792 PRINTS 90kDa heat shock protein signature 101 123 IPR020575 -
Vvi1g1162 792 PRINTS 90kDa heat shock protein signature 150 167 IPR020575 -
Vvi1g1162 792 PRINTS 90kDa heat shock protein signature 168 185 IPR020575 -
Vvi1g1162 792 PRINTS 90kDa heat shock protein signature 80 100 IPR020575 -
Vvi1g1162 792 PRINTS 90kDa heat shock protein signature 197 219 IPR020575 -
Vvi1g1162 792 PRINTS 90kDa heat shock protein signature 271 289 IPR020575 -
Vvi1g1162 792 PRINTS 90kDa heat shock protein signature 252 269 IPR020575 -
Vvi1g1162 792 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 103 262 IPR003594 -
Vvi1g1162 792 SMART HKATPase_4 102 264 IPR003594 -
Vvi1g1162 792 FunFam heat shock protein 90-5, chloroplastic 68 310 - -
Vvi1g1162 792 Gene3D - 509 596 - -
Vvi1g1162 792 SUPERFAMILY Ribosomal protein S5 domain 2-like 338 596 IPR020568 -
Vvi1g1162 792 Gene3D - 336 508 - -
Vvi1g1162 792 MobiDBLite consensus disorder prediction 298 320 - -
Vvi1g1162 792 Hamap Chaperone protein HtpG [htpG]. 70 740 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi1g1162 792 FunFam heat shock protein 90-5, chloroplastic 336 508 - -
Vvi1g1162 792 Pfam Hsp90 protein 267 767 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi1g1162 792 Coils Coil 749 776 - -
Vvi1g1162 792 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 80 295 IPR036890 -
Vvi1g1162 792 CDD HATPase_Hsp90-like 89 285 IPR020575 -
Vvi1g1162 792 MobiDBLite consensus disorder prediction 747 792 - -
Vvi1g1162 792 PIRSF HSP90_HTPG 48 782 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi1g1162 792 Gene3D - 597 743 IPR037196 -
Vvi1g1162 792 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 74 763 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi1g1162 792 FunFam Heat shock protein 90 alpha 596 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1162 Vvi-Chr1 15794455 15805127 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1162 K09487 - vvi:100264968 1459.89