Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1144 ATGAAGTACATGAAGAGGCCTATGATCCTTTTGGTTCCATATCCAGCACAGGGGCATGTCACTCCTCTGCTTAAGCTGGCTTCATGCTTGGTTACCCAAGGATTCATGCCGGTTATGATCACCCCGGAATTCATTCACCGTCAAATTGCACCTAGAGTCGATGCTAAGGACGGGATTTTGTGCATGTCCATACCAGATGGAGTGGATGAGGACTTGCCCCGTGATTTTTTCACCATAGAGATGACTATGGAGAACACCATGCCAGTTTATTTGGAGCGCCTAATTCGGAAGCTTGATGAAGATGGGCGAGTTGTATGTATGGTTGTTGATTTGCTAGCATCTTGGGCTATAAAGGTAGCCGATCATTGTGGGGTACCTGCAGCAGGATTTTGGCCTGCCATGCTTGCCACTTACGGGTTGATTTCAGCCATACCTGAACTCATCAGGACAGGCCTCATTTCTGAAACTGGAATTCCAGAGGAACAGCGTAAAATATGCTTTCTACCTTGTCAGCCTGAGCTAAGCACTGAAGATCTACCTTGGTTGATTGGAACATTTACAGCCAAAAGAGCAAGATTCGAATTCTGGACAAGAACCTTTGCACGAGCAAAAACTCTTCCTTGGATCCTTGTTAATTCCTTTCCGGAGGAATGCAGCGATGGTAAACTACAAAATCAACTGATCTATAGCCCTGGAGATGGTCCACGTCTTCTCCAAATTGGACCTTTGATTAGGCATGCCGCAATAAGAACCCCTAGCTTATGGGAGGAAGATTTTAATTGCTTGGATTGGCTAGAACAACAGAAGCCCTGCACAGTTGTCTATATTTCATTTGGAAGTTGGGTTAGCCCAATTGGGGAACCAAGGGTAAGAGATTTAGCATTAGCACTTGAAGCATCTGGAAGGCCATTCATTTGGGTACTAAGGCCTAACTGGCGTGAAGGTTTGCCAGTTGGATATTTGGAGAGGGTGTCAAAACAAGGAAAAGTTGTTTCATGGGCACCTCAAATGGAGTTGCTGCAGCACGAGGCTGTAGGGTGTTATCTCACACATTGTGGGTGGAATTCTACCTTAGAGGCTATACAGTGCCAGAAGCGTCTTCTGTGCTATCCAGTTGCAGGTGACCAGTTCGTGAATTGTGCCTACATTGTCAACGTATGGCAAATAGGAGTAAGGATTCATGGGTTCGGACAGAGAGATTTAGAAGAAGGCATGAGGAAGGTAATGGAGGATAGTGAAATGAACAAAAGGTTGTCCAAACTAAATGAGAGAATTATGGGAGAGGAGGCTGGTTTGAGAGTTATGACTAACATCACTACCTTCACTGATAATCTCAAAAAGCACGTGGTTAATTGA 1356 0.4499 MKYMKRPMILLVPYPAQGHVTPLLKLASCLVTQGFMPVMITPEFIHRQIAPRVDAKDGILCMSIPDGVDEDLPRDFFTIEMTMENTMPVYLERLIRKLDEDGRVVCMVVDLLASWAIKVADHCGVPAAGFWPAMLATYGLISAIPELIRTGLISETGIPEEQRKICFLPCQPELSTEDLPWLIGTFTAKRARFEFWTRTFARAKTLPWILVNSFPEECSDGKLQNQLIYSPGDGPRLLQIGPLIRHAAIRTPSLWEEDFNCLDWLEQQKPCTVVYISFGSWVSPIGEPRVRDLALALEASGRPFIWVLRPNWREGLPVGYLERVSKQGKVVSWAPQMELLQHEAVGCYLTHCGWNSTLEAIQCQKRLLCYPVAGDQFVNCAYIVNVWQIGVRIHGFGQRDLEEGMRKVMEDSEMNKRLSKLNERIMGEEAGLRVMTNITTFTDNLKKHVVN* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1144 451 PANTHER UDP-GLYCOSYLTRANSFERASE 72B1 1 426 - -
Vvi1g1144 451 Gene3D Glycogen Phosphorylase B; 4 257 - -
Vvi1g1144 451 FunFam Glycosyltransferase 4 250 - -
Vvi1g1144 451 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 273 420 IPR002213 GO:0008194
Vvi1g1144 451 ProSitePatterns UDP-glycosyltransferases signature. 333 376 IPR035595 -
Vvi1g1144 451 FunFam Glycosyltransferase 251 426 - -
Vvi1g1144 451 Gene3D Glycogen Phosphorylase B; 258 426 - -
Vvi1g1144 451 CDD GT1_Gtf-like 9 430 IPR002213 GO:0008194
Vvi1g1144 451 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 2 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1144 Vvi-Chr1 15343929 15346265 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1144 1 446 Glycosyltransferase AT3G22250 54.310 4.00e-177 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1144 - - vvi:100253113 936.021