Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1139 ATGAACTCACTCATATCACGTGAAGGTTATGTTGTCTATCCGCATAAGGAAAGGGTGGATGCCAGTGAGAGCTACACATTAGACAGTATAAGACACTTTTTAATCAGGCAAGAGGATAGCATCATATTTAGCCTCTTGGAGAGGGCTCAATATTATTACAATGCAGACACATATGACCATCATGCCTTCTCCAAAGATGGGTTTCATGGCTCTTTGGTTGAGTTCATGATCAAAGAAACTGAAAAACTTCATGCCCAGATGGGTAGATACGATAGTCCAAATGAGCATCCTTTCTTCCCGGCTCAATTACCTAAGCCGATGCTTCCTCCTTTGAAATACCCTCAGGTCCTGCATCCTTGTGCTGATTCAGTCAATCTAAACAATAAGGTTTGGAATATATATTTCAAAAATCTCCTTCCAAGGTTGGTTAAAGCCGGTGATGATGGTAATCATGGATCAGCTGCTGTGTGCGACACAAACTGCTTGCAAGCTCTCTCAAAGAGGATCCACTACGGAAAATTTGTAGCAGAGGCTAAATTTCTAGAATCCTCGGATGTGTATGAGGCTGCCATTAGAGAGCAAGATAGGGATAAACTCATGGCATTGCTGACCTATGAGGCAGTGGAAGCAGCAATCAAGAAGAGAGTAGAAGCGAAGGCCAAAGCATTTGGGCAGGAGGTGAGAAACATGGGAGAGGGAGATGATGGGGATGATCCAGCATATAAGATCAAGCCAAGGTTAGTTGCCAATCTGTACGGAGACTGGATCATGCCACTTACCAAGGAAGTTCAGGTTGAATACCTGTTGAGAAGGTTGGATTAA 822 0.4343 MNSLISREGYVVYPHKERVDASESYTLDSIRHFLIRQEDSIIFSLLERAQYYYNADTYDHHAFSKDGFHGSLVEFMIKETEKLHAQMGRYDSPNEHPFFPAQLPKPMLPPLKYPQVLHPCADSVNLNNKVWNIYFKNLLPRLVKAGDDGNHGSAAVCDTNCLQALSKRIHYGKFVAEAKFLESSDVYEAAIREQDRDKLMALLTYEAVEAAIKKRVEAKAKAFGQEVRNMGEGDDGDDPAYKIKPRLVANLYGDWIMPLTKEVQVEYLLRRLD* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1139 273 PIRSF Chor_mut_AroQ_eu 14 273 IPR008238 GO:0004106|GO:0009073
Vvi1g1139 273 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 18 273 IPR037039 GO:0004106|GO:0009073
Vvi1g1139 273 ProSiteProfiles Chorismate mutase domain profile. 18 273 IPR008238 GO:0004106|GO:0009073
Vvi1g1139 273 FunFam Chorismate mutase 18 273 - -
Vvi1g1139 273 NCBIfam chorismate mutase 26 273 IPR008238 GO:0004106|GO:0009073
Vvi1g1139 273 SUPERFAMILY Chorismate mutase II 17 273 IPR036263 GO:0046417
Vvi1g1139 273 PANTHER CHORISMATE MUTASE 12 273 IPR008238 GO:0004106|GO:0009073
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1139 Vvi-Chr1 15229260 15243545 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1139 K01850 - vvi:100263367 524.628