Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1133 ATGCAGCCAAGGGAACTACCGGGTTTCTATTATGACGTGGAGAAGAACAGGTACTTCCCTATCAAAGCCCCAATTCCAGGTTCTTCTTCTTCTTCCACCCGTCTCAACAAACCGCCTTCACTCCCTAAGTCGGGCAACAACATATGTAAGAGAATTGGAATCAGAGCTGCTAAGCTGCTTCAATCTAGGGAATTGCATGGTGATGTGATTCCTTCCAAGAAAGGCAAGTGTAACTTTGAGAAGGAATACCTAAAGGTGCTTGCCTCCCAACCCCTGGTCTGGAAGTATCAGGAGACAGATAGAATAGGTGATGGTGCTTTGGAACAGATATCTACTGATATTAACACATCAGATGGACAGAGTCCAAAAGATCTTTTACTAACAGGCGGTGTGAATGGCTACTTGAGTCTTTATGAAGTTGCAAAAGTTGGACAACATTTTGATTATGGGGTGAAATGCATGCCAGATCGTGTATGGCCTCCTGTTATAGGGAAACAAACAGAGTGTAGTAAAGCAGTTGGACATATTTGGAGACCCACAGGAGCCTCATTAGTTATGCAGTCAAGTATATCTTGTATCAAGATGGTTGGGAAGCACTCTCCTTGTACAATTGATGATCAATCTGCCATTCAGCACGTGTTGATAACTACCTTGGGATCAGAGACAATTGGTGGATCTGTATACATTCTGAATCTGACCAGACCATTAGATTTCAATAGCATTCCCATCATAAGGCAAAGAATGCATGAGGTTGCTTCTTTCAATTGTACAATCTGGACAGCAGATTGCAATTCTAAAGGAAGTCAAGCAGTGATTGGCACAAATGTGGGAGTGGCTTTAGTGAATATGGAAACTAGGGTACCTTCATGGGTGTGTCGTACCAAAAGCGATGTTTTGTCTCTACAACTTGATCAGTCGGGAAATGTTGTTCTATGTGGACTTAGAAATGGAGCAGTTGTGACAGTTGATGTTCGAGAGAAGCAGGAAGGGGCTTATGCTAGACATACTAGACATCGAGTACCTTATCCTTCTCATAGAATTTCTGAGGCTTCAAGTAGAACTGTTCAAAAGTTTTCCAAGCAATGGTTTGAGCTGAAGGGGAAAATATACCCTGAAAGTACCATTTTTTTACCTTCATCTATTTCCTGTTTGCTGTCCCTTCAGTTGTATGACCAGTACTTCTTGGCTAGCTCCATGGATGGATCTATGAAGCTTTATGATCATCGACTAATCCAGAGAGGTGCTGTACAGTCATACGAAGGGCATGTGAATTCCCATACCCGAATACAACTTGGAGTTGATCCATCTGAGAGATTCGTATTTTCAGGTGGGGAGGACCACAATTTTCGGATTTGGAGCATCACGTCTGGTGAACTACTGTTCGAGGATAAATTTTCAAATTCTGTCCCCTTAACACTGTGTTGGGAGCAAACTCAAAGAGTGCTGGATGGAACCCACCAACATGGGCAGATGCATGGTTGGAGTGCCTGGATTGGATCAGAAGAGGGAGTGTTTCGCATGCAATGGTGA 1530 0.4314 MQPRELPGFYYDVEKNRYFPIKAPIPGSSSSSTRLNKPPSLPKSGNNICKRIGIRAAKLLQSRELHGDVIPSKKGKCNFEKEYLKVLASQPLVWKYQETDRIGDGALEQISTDINTSDGQSPKDLLLTGGVNGYLSLYEVAKVGQHFDYGVKCMPDRVWPPVIGKQTECSKAVGHIWRPTGASLVMQSSISCIKMVGKHSPCTIDDQSAIQHVLITTLGSETIGGSVYILNLTRPLDFNSIPIIRQRMHEVASFNCTIWTADCNSKGSQAVIGTNVGVALVNMETRVPSWVCRTKSDVLSLQLDQSGNVVLCGLRNGAVVTVDVREKQEGAYARHTRHRVPYPSHRISEASSRTVQKFSKQWFELKGKIYPESTIFLPSSISCLLSLQLYDQYFLASSMDGSMKLYDHRLIQRGAVQSYEGHVNSHTRIQLGVDPSERFVFSGGEDHNFRIWSITSGELLFEDKFSNSVPLTLCWEQTQRVLDGTHQHGQMHGWSAWIGSEEGVFRMQW* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1133 509 Pfam WD domain, G-beta repeat 416 453 IPR001680 GO:0005515
Vvi1g1133 509 SUPERFAMILY WD40 repeat-like 123 490 IPR036322 GO:0005515
Vvi1g1133 509 Gene3D - 112 495 IPR015943 GO:0005515
Vvi1g1133 509 MobiDBLite consensus disorder prediction 23 42 - -
Vvi1g1133 509 SMART WD40_4 412 453 IPR001680 GO:0005515
Vvi1g1133 509 SMART WD40_4 368 407 IPR001680 GO:0005515
Vvi1g1133 509 SMART WD40_4 285 323 IPR001680 GO:0005515
Vvi1g1133 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 419 462 IPR001680 GO:0005515
Vvi1g1133 509 MobiDBLite consensus disorder prediction 25 42 - -
Vvi1g1133 509 PANTHER DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATED 1 509 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1133 390 464 Miscellaneous Gene Families AT5G08390 32.000 3.83e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1133 K11799 - nnu:104599783 642.499