Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1128 ATGGCGTCTTCGCAAGTGGAAATCGCTTCGTCTTCACCATTTGGCTGTGTTCTCAGAGATCACAATCGTCGGGAACCCCCCTGCAGAGACAGCAATGCCCAAGCTGCTTTCCACAACAACCTCAAAGTATTCGTTAGGGATCACGTCCGCCCCAGCATTTCGATCATCCCCTCCGACGAAAATTCTCATCCTCCTCCTGCTGCCTTCTATTGTTGGATTCCCCAACAACAGGGGATTCGTCACCGTCGCCGTAGCCTCTCTTTCCGCACCAACAGGGAGGAAAAATCAAAGGACATGAGCGGGAGGGAGTCGGGAATTATGGATCAATGGGTCACTCGGCAAGCCCAAGAAACGGTATCCACCACTGAGAGACATACCCACGAGGCCCAGCTCCTGTCTCCATCCCAATTTCCGCCAGACCATTCCCCCTCTCAATCCAGTAATTCCCCCGATGTCCCCAATCTTGGAGCTTCTTCCCTGGTTCAAATGTGGGAGGCAAGGGTCAGTCGCTCCGATAGTTTGAATTCCTTGGCTGTTAGCAGGACCAACTCTGGCTTTAGCTACACTGAAATTGCTGAAGAACCTTCCTCAAGGCCCTCCGAAGTTTGTGAACCCGCTGGTGAAAGATATGATACTCACACAAATAACGGCGATTCATATCCAGATTGGGAATCTGAGAGAACAGCCCCCAGCGACCAACCTTTATCATCACAGGGTCAGGATTCTGATGCTGGAGAAAATGAGAGGGTTAGAGTTGCAGATATCATTAGGAGGTTGACATCCGGAAAACATCGAGCCCAGAATTCCTTAATGTGTTGCAGCGACGACAATGACCACGAGCAGCCAGTTGTGACTTCTCCCCGGCTAAGGGGGAGACAAGCATATATCAATTTGCTTACGCAAATGGAGCACGACAGGCAGAGGGAGCTTGGCCGAGTGGCGGACTGTCAAGCAGTTTCAAGGTTCCCGCATCGAGGTCGCATTCAGTCAATGCTTAGGCTTAGATTCCTACACCAGGGAATGACAGTACATGATCAACTGCGGCCATTGTCAAGAGGATCTGAATTGGGCCCGTCACAAGGATCTGGCATCATGCTTCTCAGGGAGAGATTTAGCACAGGAGTTGAGCATGGTAGTGTGACAGCCCAAAGTTGTGTTCCAAATTCAAGAAGCCCTCCAAATAACACCCTGGCTTTTGAAAATTCTCCTACTTCCAATCAGATCAGTGAAGACATTCATCGTCAGGAAGTCAGTACTAGTGAGCCACAGAGTACAACCTCAGCAGAGCAGTTGATGTCATATGCAACAGAATATGTTCAGGAAGATGCTGGTCCAAGTTCAGATACATGGCAAGGGCCAAGCTTTGAGGTTGGCAGTCTTGACTCAGAAGAGCAAGAAACTGCCGATAGAATGACAACCTTGAATAATTGGGATATGAATATTAATGCAGAAGAAGAAGAGGTTGGAGAACTGAATTTATTTGGAACCCATTATGACTGGTTTAGTGAAATTTCTCGCCCACGGAGATATTGGGAAGATCTCAGGCAAGCATGGTACCAGGAGATGCTTGAAAGTAACTCAGACAATGAGGAGATACGACAACTCCTTGAAAGAAGAAGAGTCTCAACTTTTCTAGCAAGTGACTTCCGGGAGAGAATGGACCAATTGATGACGTCTCACTTACAGCAACAACTGCATCCAGAGGGTAGTCAAAGAGAAGTACAGTCAAAAGAAGAAAGAGGAAGACAAGGGATTTCTGTTGTGCATCAGAGCCGCAACACAAGTGATCATTTCAATGAAGATACATCATCATTGCAGTTGCCTTCTCCATCTTTATTCAGGTCAGGGGGTCACTTTCAAGATCAGGAAGTTAGTGATGATTCTGATCAAGTTCCTTCTTCATCTTTGCAACTACGTCCATCTCTATCCCCATCTGCTTCCCCATCTGCACCTCAATTTTACTATCAGGGTAGTCCACAATCATCTTCCATTACTAGTCGTCCTTCAATTGAAATGGATCTCATATATGATTTGAGAGGACAAATGAAGCAACTCCATCATGAGATGGCTGAGCTACGAAAATCAATAAATTGCTGCATGAATATGCAGGTAAAATTGCAACAATTCATGAAGCAGAAGGTTTCAGCTGCAAGTCATTCTGTTGGAAGGCAGGGGAAGAAATCACTCAACTCAGCACCAAGGAAAGGAAATTGCTGTCTTTGTTATGAAAAGAAAATCGACTCACTTTTATACAGATGTGGTCACATGTGTACCTGTCTCAAGTGCGCCCATGAATTGCAGTCGAGCACTGGGAAATGCCCAATCTGTCAAGCTTCAATTGTTGATGTTGTGCAGGCATATGCTGATGCATAG 2373 0.4652 MASSQVEIASSSPFGCVLRDHNRREPPCRDSNAQAAFHNNLKVFVRDHVRPSISIIPSDENSHPPPAAFYCWIPQQQGIRHRRRSLSFRTNREEKSKDMSGRESGIMDQWVTRQAQETVSTTERHTHEAQLLSPSQFPPDHSPSQSSNSPDVPNLGASSLVQMWEARVSRSDSLNSLAVSRTNSGFSYTEIAEEPSSRPSEVCEPAGERYDTHTNNGDSYPDWESERTAPSDQPLSSQGQDSDAGENERVRVADIIRRLTSGKHRAQNSLMCCSDDNDHEQPVVTSPRLRGRQAYINLLTQMEHDRQRELGRVADCQAVSRFPHRGRIQSMLRLRFLHQGMTVHDQLRPLSRGSELGPSQGSGIMLLRERFSTGVEHGSVTAQSCVPNSRSPPNNTLAFENSPTSNQISEDIHRQEVSTSEPQSTTSAEQLMSYATEYVQEDAGPSSDTWQGPSFEVGSLDSEEQETADRMTTLNNWDMNINAEEEEVGELNLFGTHYDWFSEISRPRRYWEDLRQAWYQEMLESNSDNEEIRQLLERRRVSTFLASDFRERMDQLMTSHLQQQLHPEGSQREVQSKEERGRQGISVVHQSRNTSDHFNEDTSSLQLPSPSLFRSGGHFQDQEVSDDSDQVPSSSLQLRPSLSPSASPSAPQFYYQGSPQSSSITSRPSIEMDLIYDLRGQMKQLHHEMAELRKSINCCMNMQVKLQQFMKQKVSAASHSVGRQGKKSLNSAPRKGNCCLCYEKKIDSLLYRCGHMCTCLKCAHELQSSTGKCPICQASIVDVVQAYADA* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1128 790 PANTHER BNAC05G24000D PROTEIN 450 789 - -
Vvi1g1128 790 MobiDBLite consensus disorder prediction 87 102 - -
Vvi1g1128 790 MobiDBLite consensus disorder prediction 586 618 - -
Vvi1g1128 790 CDD mRING-HC-C3HC5_NEU1 735 787 - -
Vvi1g1128 790 MobiDBLite consensus disorder prediction 440 461 - -
Vvi1g1128 790 MobiDBLite consensus disorder prediction 626 666 - -
Vvi1g1128 790 SUPERFAMILY RING/U-box 737 783 - -
Vvi1g1128 790 MobiDBLite consensus disorder prediction 571 585 - -
Vvi1g1128 790 MobiDBLite consensus disorder prediction 229 243 - -
Vvi1g1128 790 MobiDBLite consensus disorder prediction 107 156 - -
Vvi1g1128 790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 721 790 IPR013083 -
Vvi1g1128 790 MobiDBLite consensus disorder prediction 189 248 - -
Vvi1g1128 790 MobiDBLite consensus disorder prediction 440 468 - -
Vvi1g1128 790 Pfam Zinc finger, C3HC4 type (RING finger) 735 782 - -
Vvi1g1128 790 ProSiteProfiles Zinc finger RING-type profile. 738 777 IPR001841 -
Vvi1g1128 790 MobiDBLite consensus disorder prediction 561 666 - -
Vvi1g1128 790 MobiDBLite consensus disorder prediction 382 428 - -
Vvi1g1128 790 MobiDBLite consensus disorder prediction 82 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1128 Vvi-Chr1 14854163 14859888 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1128 - - vvi:100253105 1543.48