Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1125 ATGGATTTCTACGGTCTCTACATTTTATACCTTGATTCTAATCATTTTTTAAAAAACCTTAGGTTGATGCTTGTGGAACGAATGACCAAGAATCTTACGATTTCATCTATACTCTCTAGAAAATATGGTCTTCTGATGAGAGAAAAAGTTGAGGAGCATGCTAAGGAAATAGAAGATGTAGCCTTTGCTACGGCAAACCAACATTATGAGAGGAAGCCTAATGGTGATGGAAGCTTTGTTGTGCAACTTTATGCTAAAGAGTCCAATAAGTTTATGTTGGAAATTCTTAAACAAGGTCCTAAGACAAAGGAGGATGGCGAAGTAACGACAGCAAGATATATGAGAGAAATGGATATTCCACCTAGTGTTGCTTCCCTAAATGTTTTGATCAAAGCCCTAAGCAAAAATAGTGGAACAATGGGTGCTATTCTTCGGATATTTAGGGAGATGCCCAATCGAGGATGTCCTCCAGATTCATATACGTACGCTATTAGGTTGCTTGAAGAGATGGTAAGCAAGGGCATTGAACCCAATGTTTTTACTTACAGTTCTTTAATGGATGGTAATTGCAAGAGTGGGTGTTCATCACAAGCTCTGGAGTTATTAGATATGATGGTTAGCAGACGCCATTTGCCCAACATGATTACATACAGTACTTTAGTCCATGGACTTTGTAAAGAAGGAAAGCTTCAAGAAGTTGTGGAGATTCTTGACAGGATGAAGCTCCAAGGCTTGAGACCGAATGCAAGATTGTATGGGAAGATCATAAGTGGCTTCTATGATATTTTCAAATCCCATGAAGCTGCAAACTTCCTTGATGAAATGGTCCTTAGGGGGATCACCCCAAACTGA 852 0.392 MDFYGLYILYLDSNHFLKNLRLMLVERMTKNLTISSILSRKYGLLMREKVEEHAKEIEDVAFATANQHYERKPNGDGSFVVQLYAKESNKFMLEILKQGPKTKEDGEVTTARYMREMDIPPSVASLNVLIKALSKNSGTMGAILRIFREMPNRGCPPDSYTYAIRLLEEMVSKGIEPNVFTYSSLMDGNCKSGCSSQALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEVVEILDRMKLQGLRPNARLYGKIISGFYDIFKSHEAANFLDEMVLRGITPN* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1125 283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 157 IPR002885 -
Vvi1g1125 283 Gene3D WPP domain 17 106 IPR038214 -
Vvi1g1125 283 Gene3D Tetratricopeptide repeat domain 164 283 IPR011990 GO:0005515
Vvi1g1125 283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Vvi1g1125 283 Gene3D Tetratricopeptide repeat domain 107 163 IPR011990 GO:0005515
Vvi1g1125 283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Vvi1g1125 283 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 112 163 - -
Vvi1g1125 283 Pfam WPP domain 19 105 IPR025265 -
Vvi1g1125 283 Pfam PPR repeat family 182 226 IPR002885 -
Vvi1g1125 283 Pfam PPR repeat family 121 164 IPR002885 -
Vvi1g1125 283 NCBIfam pentatricopeptide repeat 215 249 IPR002885 -
Vvi1g1125 283 NCBIfam pentatricopeptide repeat 180 213 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1125 Vvi-Chr1 14742443 14754606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1125 114 283 Glycosyltransferase AT1G05670 30.811 7.89e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1125 - - vvi:100249913 257.684