Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1117 ATGTGTTCCTCCAAGTCTAAGCTGCACCAAGGTATTGATATCACCCCATCTAAGGCTCAGATCAATGGCCGTCCAGCCCTTCAGCCCACTTGCAACCGAATTCCTAGCCTAGAAAGGCATCATTCATTTAAGAAGATCTCCCCAAAATCTCCTACTTCTCCACTACCTGCATCTCCCCCGCCACCAACTACTATTATTAATACTACTAAAACCAAGCCTTCATTAACTCCTCCAGCCTCTCCCAACTTAAAATCACCTAGGCAACCAGCACTTAAGAGAGGAAATGATCCTAACGGGTTGAATTCTAGTCTTGAGAAGGTGTTAACACCACGAGGAACCACCAAATCCTCTAGTTCACCGAAGAAGACAAAAAAATGCAGTGCTGGATTAGCACCTTCTTCTGACACTAGTTCATTGAATTACTCTTCCTCTTTGATAGTTGAGGCTCCAGGGAGCATAGCAGCAGCAAGAAGGGAACAAATGGCCATTATGCAAGTGCAGCGAAAGATGCGAATTGCCCACTATGGAAGAACAAAGTCTGCCAAGTACGAAGAGAAGATAGGTCCTGTAGATCCTTTGGTTATCACCACTCGAGAGGAAAAGAGATGCAGTTTCATCACCCCCAATTCAGATCCTAGCTATGTTGAATACCATGATGAAGAATGGGGTGTCCCGGTCCATGATGATAAGCGGCTGTTCGAACTGCTAGTGATGACTGGTGCTCAAGTTGGATCAGACTGGACAACTGTCTTGAAGAAACGTCAGGAATACAGGGATGCATTGTCCGGATATGATGCAGAAATTGTGGGAAAATTCAGCGAAAAGAAGATAACAAGCATCAGTGCTTATTATGGCATAGATTTGAGCCAAGTTCGAGGAGTGGTGGACAACTCTAACCGAATTCTTGAGATTAAGAGGGAATTCGGATCATTTCACAAGTATATCTGGGGATTTGTGAATCACAAGCCCATTACCACCCAGTACAAATCATGCCACAAGATCCCAGTGAAGACCTCGAAATCAGAGAGCATCAGCAAAGACATGGTGAGGAGGGGTTTCAGGTTGGTTGGGCCCACTGTAATTTATTCGTTCATGCAAGCCGCTGGCCTCACCAATGACCACTTGATCAGCTGTCCTAGACATCTTCAATGCATCGCGCTGTCATCACACCAACCCGCCGTAGCCCCGGCTCTATAG 1197 0.4586 MCSSKSKLHQGIDITPSKAQINGRPALQPTCNRIPSLERHHSFKKISPKSPTSPLPASPPPPTTIINTTKTKPSLTPPASPNLKSPRQPALKRGNDPNGLNSSLEKVLTPRGTTKSSSSPKKTKKCSAGLAPSSDTSSLNYSSSLIVEAPGSIAAARREQMAIMQVQRKMRIAHYGRTKSAKYEEKIGPVDPLVITTREEKRCSFITPNSDPSYVEYHDEEWGVPVHDDKRLFELLVMTGAQVGSDWTTVLKKRQEYRDALSGYDAEIVGKFSEKKITSISAYYGIDLSQVRGVVDNSNRILEIKREFGSFHKYIWGFVNHKPITTQYKSCHKIPVKTSKSESISKDMVRRGFRLVGPTVIYSFMQAAGLTNDHLISCPRHLQCIALSSHQPAVAPAL* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1117 398 SUPERFAMILY DNA-glycosylase 201 385 IPR011257 GO:0003824|GO:0006281
Vvi1g1117 398 PANTHER OS04G0501200 PROTEIN 19 390 - -
Vvi1g1117 398 Pfam Methyladenine glycosylase 209 380 IPR005019 GO:0006284|GO:0008725
Vvi1g1117 398 MobiDBLite consensus disorder prediction 1 29 - -
Vvi1g1117 398 MobiDBLite consensus disorder prediction 95 140 - -
Vvi1g1117 398 Gene3D Hypothetical protein; domain 2 200 384 - -
Vvi1g1117 398 MobiDBLite consensus disorder prediction 1 140 - -
Vvi1g1117 398 MobiDBLite consensus disorder prediction 64 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1117 Vvi-Chr1 14354642 14356756 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1117 K01246 - vvi:100256507 743.421