Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1114 ATGAAGTTCGGGAAGGAGTTCACGGCACAGATGGTGCCGGAATGGCAGGCAGCATATATGGATTACAATTATCTCAAGACACAGCTGAAAGAAATCCAGCGTTTTCATGCAAGGGATAGGGCACCGGCTCGGTTGGTGAAGCGAACGTCATCGCTTTACAGAGCTTTCAGTGGTCTAATACAGAGACAGAAGTCACAAAACCAACCCACAAACTTAACCTCGCCAGACGCGGAGAGCCAAGTCATTGTGGTGAATTCTGTGGCCCAAGATGGCTCACAGGGCTACGAGACTAGGTTTTTTATGTCGGGAGAAGAAGGAGGAGAATACGAGCTGGTGTTTTTCAGAAGGCTAGATGATGAGTTCAATAAAGTTAATAAGTTTTACAGGTCTAAGGTGGAGGAGGTCTTGAAGGAGGCTGACGTGCTGACCAAGCAAATGAATGCCTTGATTGCTTTTCGGATAAAAGTGGAGAATCCAAATGGTTGGGCTGATAGGTCAAATGAGATTACTCGCCTTTCTTCTGATGTTGCAGCTTCATCGGCTGCATTGTCAGCCTCCGCTCCATCTGGGGCCAGAGCAGCAAGCAGAAGAGTTTTCAAGGACTTTCTACTAGATGTCGAACCCACCAGCAGGAGGAGGCAACCAGATGAATCGAGCGATGGAAAGGATGAAACCAAGGAGGACAATGCTATCCACCAAAACATTGAGAAACAGAAGCCAAATAACTTCAGGGCAGCTAGACCTGCTCCGTTACAAATACTCGAACGTTTGAAAATCAACAACACTCTTGAGACTCCTCGATCAACCATTAAAGGCCTCCTCAATATTCCCAAGTGGACAGAGCCAAACTTCAATACAGAGTGTCTGAAGAAAGTTGAACAACGGCTTAAGCAGGCTTTGGTTGTATTTTATAACAAGCTGCGGCTTCTAAAGAGCTACAGCTTCTTGAATACCATGGCATTGTCCAAGATCATGAAGAAATACGACAAGATCACGTCAAGAAATGCATCAAAAGCTTACTTGAAAATGGTGGATAGCTCCTACCTTGGTAGCTCTGATGAGGTAACCAAACTCATGGAAAGAGTGGAAGCCACATTCATCAAACATTTCTCAAATGCAAACCGCAGTAAAGGCATGAGCATATTGAGACCAAAAGCAAAGAGAGAAAGGCACAGAGTAACATTTTTCATGGGTTTCTTTTCTGGATGCACAGCAGCTCTGATAGTGGCTCTTGTTTTGATTGCACGGGCTCGCAACTTCATAGATCATCCAGGGGCAACCCAGTACATGGAAACCATGTTTCCCCTTTACAGCCTGTTTGGATTTTTTGTCCTACACATGCTTGTGTATGCTGCTAATATTTACTTCTGGAGGCGGTACCGAGTCAATTATTCATTCATATTTGGTTTCAAGCAAGGAACAGAGATGGGCTACCGAGAAGTTCTCCTCCTCAGCTTTTGTCTGGCAACGCTAGCCCTGGCTAGTGTGGTCTCAAACCTCGACATGGAAATGGACCCCAAAACGAAGGACTATAAAGCAGTCACTGAACTTATCCCTCTGGTACTAGTTGTGCTTGTACTTATCATACTCCTCTGCCCATTCAACATCATCCTTCGCTCAAGTCGATTCTTCTTCCTCACATGCTTATTTCACTGTCTCTGTGCTCCTCTTTACAAGGTCACACTCCCAGATTTCTTCTTGGCAGATCAACTCACTAGCCAGTTGCAAGCCTTTAGGAGCCTGGAGTTCTATGTTTGCTACTATGGTTGGGGAGACTACAAACTCAGACAGAACACTTGCAGCACAAATGATGTCTTCAAAGCCTTCTCTTTCATTGTAGTTGCAATTCCATACTGGTGTCGCCTCTTTCAGTGCCTGCGAAGGCTGTTTGAGGAGAAGGATCCGATGCAAGGATACAATGGGCTGAAATATTTCTCGACCCTGGTTGCCATTAGTGTGAGGACAGCTTACAGCCTTGACAGGGGGAAAATAAACTGGAACATTATGGCCTGGATTTTCTCGGTCATTGCAGCAATCTGTGGTACATACTGGGACCTGGTAGTTGACTGGGGGCTTCTGCAAAGGCAATCCAAGAACCGCTGGTTGAGAGACAAACTCCTCATCCCCTACAAAAGCGTATATTTTGGAGCTATGGTGCTGAATGTTTTGTTGAGATTTGCCTGGTTACAGACAGTGTTGAATTTCCAGGTCTCTTTCCTACATAGGGAAGCCATGATTGCAATTTTTGCTAGCTTGGAGATCATCCGTCGTGGCATATGGAATTTCTTCAGGTTGGAGAACGAACATTTGAACAATGTGGGTGCATACCGCGCATTCAAGTCAGTACCATTACCCTTCAACCATGATGAGGATGATGACAAAGATGATTAG 2391 0.4525 MKFGKEFTAQMVPEWQAAYMDYNYLKTQLKEIQRFHARDRAPARLVKRTSSLYRAFSGLIQRQKSQNQPTNLTSPDAESQVIVVNSVAQDGSQGYETRFFMSGEEGGEYELVFFRRLDDEFNKVNKFYRSKVEEVLKEADVLTKQMNALIAFRIKVENPNGWADRSNEITRLSSDVAASSAALSASAPSGARAASRRVFKDFLLDVEPTSRRRQPDESSDGKDETKEDNAIHQNIEKQKPNNFRAARPAPLQILERLKINNTLETPRSTIKGLLNIPKWTEPNFNTECLKKVEQRLKQALVVFYNKLRLLKSYSFLNTMALSKIMKKYDKITSRNASKAYLKMVDSSYLGSSDEVTKLMERVEATFIKHFSNANRSKGMSILRPKAKRERHRVTFFMGFFSGCTAALIVALVLIARARNFIDHPGATQYMETMFPLYSLFGFFVLHMLVYAANIYFWRRYRVNYSFIFGFKQGTEMGYREVLLLSFCLATLALASVVSNLDMEMDPKTKDYKAVTELIPLVLVVLVLIILLCPFNIILRSSRFFFLTCLFHCLCAPLYKVTLPDFFLADQLTSQLQAFRSLEFYVCYYGWGDYKLRQNTCSTNDVFKAFSFIVVAIPYWCRLFQCLRRLFEEKDPMQGYNGLKYFSTLVAISVRTAYSLDRGKINWNIMAWIFSVIAAICGTYWDLVVDWGLLQRQSKNRWLRDKLLIPYKSVYFGAMVLNVLLRFAWLQTVLNFQVSFLHREAMIAIFASLEIIRRGIWNFFRLENEHLNNVGAYRAFKSVPLPFNHDEDDDKDD* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1114 796 CDD SPX_PHO1_like 2 338 IPR034092 -
Vvi1g1114 796 Coils Coil 125 145 - -
Vvi1g1114 796 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 792 - -
Vvi1g1114 796 Pfam EXS family 433 770 IPR004342 GO:0016020
Vvi1g1114 796 ProSiteProfiles EXS domain profile. 601 796 IPR004342 GO:0016020
Vvi1g1114 796 ProSiteProfiles SPX domain profile. 1 342 IPR004331 -
Vvi1g1114 796 Pfam SPX domain 1 344 IPR004331 -
Vvi1g1114 796 MobiDBLite consensus disorder prediction 209 234 - -
Vvi1g1114 796 MobiDBLite consensus disorder prediction 209 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1114 Vvi-Chr1 14215872 14219965 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1114 - - vvi:100262561 1533.47