Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1113 ATGAAGTTCGGGAAGGAGTTCAGGGCACAAATGGTGCCGGAATGGCAAGACGCATACATGGACTACAGTTTTCTTAAGACCCTCCTAAAAGAAGTGCAGCGTTTCAAGCAAAGAAACAGGCCACCAGTCACACCCAACCGTGGCCTGAAGCGGAAGATGACATTATACAGAGCCTTCAGTGGCCTAACACGACACAACAGCCCCCCGAGCCCTTCCGAATCCGACATTGAAAGCCAAGTCATTCTGGTGAATTCGGTGAGGAGGGACGGGGACGGGTCTGAGAGCTACGAGACCAAGTTTCTCATGTCAGCAGACGAGGGAGGAGAATACGAGCTTGTCTACTTTAGAAGGCTCGATGATGAGTTCAATAAAGTGGACAAGTTTTATAGGTCTAAGGTGGAAGAGGTGATGAAGGAGGCAGCCTTGTTGAATAAGCAAATGGATGCTTTCATTGCGTTTCGATTAAAAGTGGAGAATCCGCAGGGTTGGTTTGATAGATCAGCCGAGTTAACTCGTATCTCTAACGATGTCGCCACTTCAACCGCCACGTTAGCAGCTACTACTCCATCTGGAGTCCGAGCAAGCCGGAGAGTAGCTCATATGGATGTAATAGAAGAAGGAGGATCGATCAGTAATCATGAACAGTCGGATGAATCAAGTGATGAACATAAAGATGTGAACATAATCAAACCTGTAAACACAAGTGTCCAAGAACAGAAGCCAAGTAGCATCAAGGCAACAAGACCAGCTCCATTAGAAGTACTTAAGCGTGTGAGGATAAACAACACCGTGGAGACTCCTCGTTCCACCATTAAAGAAATCCTTAATGTTCCTAAGCCAGAAGAGCTGAATTTTACTCGAAAGAATCTAAGGAAAGTTGAAGATCAACTTAAGTGCGCTTTTGTCGAATTTTACCACAAGCTTCGGCTCCTTAAGAGCTACAGCTTCATGAATACGTTGGCGTTCTCGAAGATCATGAAGAAATATGATAAGATCACTTCTAGAAATGCGTCAAAATCTTATTTGAAGATGGTGGATAACTCCTTCCTTGGCAGCTCTGACCAGGTTACTAAACTTATGGAGAGGGTAGAAGCTACCTTCATCAAGCATTTCTCCAACTCAAATCGAACTAAAGGAATGAAAATTTTGCGACCGCAAGCAAGGAAAGAAAGGCATAGACTAACATTTTCTTTGGGTTTCTTTGCTGGCTGCACAGCTGCTCTCATTCTGGCCATTATTTTGATCGCTCGCACCCGCCGTCTCCTAGATTACAAGAAAGAGAATGACCAGTACATGGAAAACATGTTCCCTCTTTACAGCTTGTTCGGGCTAGTTGTTCTGCACATGCTTATGTATGCTGCAAATATATTCTTCTGGAGACGCTACAGAGTCAATTATTCATTTATATTTGGATTCAAGCGTGGAAGGGAGTTGGGCTACAGGGAAGTTTTCCTTCTTGCTTTTGGTCTAGCAGTATTAGCACAAGCCTGTGTGCTCTTAAACCTCGATATGGAGATGGACCCAAAAACAATGGAATATGAAGCTCTCACTGAACTTCTTCCCCTGGGTCTAGTTATGCTAGTAGTTGTCATATTAATCTGCCCCTTTAACATAGCTTATCGCTCCAGTCGATTCTTCTTACTCACATGTTTACTTCATTGTCTCTGCGCACCTCTCTACAAGGTCACACTCCCAGACTTTTTCTTGGCAGACCAACTAACTAGCCAGGTGCAAGCAATTAGAAGTCTGGAGTTTTATGTCTGCTATTATGGTTGGGGAGATTATAAACATAGACAAAACACCTGTAAATCAAGTGGTGTATACAATACTTTCTACTTCATTGTCGCTGTGATTCCCTACTGGTCTCGCCTCCTTCAGTGCCTCAGACGCCTGTTTGAAGAGAAAGATCCAATGCAAGGATACAATGGGCTGAAATATTTTGCAACAATTGTGGCAGTTTGTGTGAGAACAGCTTACAGTCTTGACAAGGGAATGGGGTGGAGAGTCATAGCGTGGGTTTCCTCCATAATTGCAGCAATATCGAGTACATATTGGGATCTTGTTATTGACTGGGGCCTACTGCAAAAGAACTCCAGGAACCGTTGGTTGAGGGACAAACTCCTTGTCCCCCACAAGAGTGTATACTTTGGAGCTATGGCCTTGAACGTGTTGCTGAGACTCGCCTGGATGCAAACCGTGTTGAATTTCCAGTTTTCCTTCTTACATAGACAGGCCCTGATTGCAATTGTTGCCGGCCTAGAAATTATTCGCCGTGGCATATGGAATTTCTTCAGGCTTGAGAACGAGCATTTGAATAATGTTGGCAAGTACCGTGCATTCAAGTCAGTACCTTTACCTTTCAACTACGATGAAGAGCAAGAAAAGGATGAGTAG 2394 0.4415 MKFGKEFRAQMVPEWQDAYMDYSFLKTLLKEVQRFKQRNRPPVTPNRGLKRKMTLYRAFSGLTRHNSPPSPSESDIESQVILVNSVRRDGDGSESYETKFLMSADEGGEYELVYFRRLDDEFNKVDKFYRSKVEEVMKEAALLNKQMDAFIAFRLKVENPQGWFDRSAELTRISNDVATSTATLAATTPSGVRASRRVAHMDVIEEGGSISNHEQSDESSDEHKDVNIIKPVNTSVQEQKPSSIKATRPAPLEVLKRVRINNTVETPRSTIKEILNVPKPEELNFTRKNLRKVEDQLKCAFVEFYHKLRLLKSYSFMNTLAFSKIMKKYDKITSRNASKSYLKMVDNSFLGSSDQVTKLMERVEATFIKHFSNSNRTKGMKILRPQARKERHRLTFSLGFFAGCTAALILAIILIARTRRLLDYKKENDQYMENMFPLYSLFGLVVLHMLMYAANIFFWRRYRVNYSFIFGFKRGRELGYREVFLLAFGLAVLAQACVLLNLDMEMDPKTMEYEALTELLPLGLVMLVVVILICPFNIAYRSSRFFLLTCLLHCLCAPLYKVTLPDFFLADQLTSQVQAIRSLEFYVCYYGWGDYKHRQNTCKSSGVYNTFYFIVAVIPYWSRLLQCLRRLFEEKDPMQGYNGLKYFATIVAVCVRTAYSLDKGMGWRVIAWVSSIIAAISSTYWDLVIDWGLLQKNSRNRWLRDKLLVPHKSVYFGAMALNVLLRLAWMQTVLNFQFSFLHRQALIAIVAGLEIIRRGIWNFFRLENEHLNNVGKYRAFKSVPLPFNYDEEQEKDE* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1113 797 ProSiteProfiles EXS domain profile. 603 797 IPR004342 GO:0016020
Vvi1g1113 797 Pfam SPX domain 1 345 IPR004331 -
Vvi1g1113 797 MobiDBLite consensus disorder prediction 206 226 - -
Vvi1g1113 797 MobiDBLite consensus disorder prediction 211 226 - -
Vvi1g1113 797 CDD SPX_PHO1_like 2 339 IPR034092 -
Vvi1g1113 797 Pfam EXS family 435 771 IPR004342 GO:0016020
Vvi1g1113 797 ProSiteProfiles SPX domain profile. 1 343 IPR004331 -
Vvi1g1113 797 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1113 Vvi-Chr1 14194102 14198011 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1113 - - vvi:100257438 1515.36