Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1112 ATGAAGTTCGGAAAGGAGTTCAAGGCACAAATGGTGACGGAATGGCAAGAAGCATATATGGATTATCATTATCTCAAGAACCTTCTAAAAGAATTGCAACGCTTCAAGGGAAAAAATGAAAGGTCACCAACCACCTCAGCTCGGCTGCAGCGAAAGTTGACACTGGTCCGAGCTTTCAGTGGCCTAACACAAAGACACAACCATCCCACAACCCCATCACCAACCGACGTGGAATGCCAAGATAATCTGGTGAATTCAGTGGAGCAAGGAGGCTCGGGGGTCTATGAGATTATGTCGCCCATATTGAAAGCCGAGGAAGGAGAAATAGAGCTTGTCTACTTCAAAAGGCTTGACGAGGAGTTCAATAAAGTTGTCCAGTTCTACAGATCTAAGGTGGAAGAGGTGATGAATGAGGCAGCATTATTGAATAAGCAAATGGATGCTTTAATCGCTTTTCGAGTAAAAGTGAGGAATCCACAAGGTTTCATGGATAGTTCAGTGGAGATGGCTCGCCTTTCTGTGGATGTTGCAACTTCAACTGCAGCGCTGTCCGCCACTACTCCATCTGCAGCTAGATCAAGCCGAAGAATTTTTGATATTGGTACAATAGAAGAAGTTGAGGAGGAGATCAGCAAGATTGAGCAATCTGATGATGTTGAATTTAGTGTAGCCAAAGATGTGGAGAAGCCCAAAACTACCAAGCAAAGTAGTCAAGAAGGGAAGCCAAATAGCATCAGGGCCAGTACTAGACCAGCTCCATTACAAGTACTTAGAAGTGTGAAAATGAACAACACCTTGGAGACACCTCGTTCCACCATCAAAGGCTGCCTCAACGTTCCTCAGTGCAGAGAGATGAATTTCACCAGGGAAAATTTAGAGAAAGTTCAAAATCAACTTAAGCGGGCTTTTGTTGAATTCTACCACAAGCTTCGCCTTCTAAAAAGCTACAGCTTCATGAATACGTTGGCGTTTTCCAAGATCATGAAGAAATATGACAAGATAACATCCAAACATGCATCAAAGGCTTTCCTCAAAAAGGTGGATGATTCTTATCTTGGCAGCTCTGATAAGGTTACCAAGCTTATGGAGAGGGTGGAATCTACATTCATCAAGCATTTCTCCAACTCAAACCGTGGAAAAGGGATGAAGATCTTGAGACAAAAAGCTAAGAAAGAAAAGCATAAAGTGACTTTTACGCTAGGCTTCTTTGCTGGTTGTTCAAAAGAACGCAATACATGCAAAACATGTTTCCCTCTTTATAGCTTCTTCGGCTTCATTGTTCTCCACATGCTTATGTATGCTGGGAATATATACTTTTGGCAGCAATACAGAGTCAATTATTCATTTATATTTGGTTTTAAGCAAGGAACACAGTTGGGTTATCGCGAAGTTTTCTTCCTTAGTTTTGGGCTTTCAGTATTAGCACAGGCCAGTGTGCTCTCAAACCTTGACTTAGAGATGGACCCCAAAACAAAGTCCCACCAAGCAATCACTGAACTTGTCCCTCTGGCTTTACTTGTCCTTGTGATTGCCATATTGTTCTGCCCATTCAACATCATATATCGCTCAAGTCGATTCTTCTTCCTCACATGTTTGTTTCACTGTATCTGTGCACCTCTCTACAAGGTCACACTCCCAGACTTTTTCTTGGCAGACCAGCTAACTAGCCAGGTGCAAGCATTTAGAAGTTTTGAGTTCTTTTTGTGCTACTATGGTATGGGAGATTACAGACTTAGACAGAATACCTGTAAACGCAATGATGCGTACAATGCTTTCCTCTTTATAGTTGCTGCGGTTCCATACTGGTGTCGCTTCCTTCAGTGCCTTAGACGACTGTTTGAAGAGAAAGATCCGATGCAAGGATATAATGGGCTCAAATATTTCTCAACCGTTGTAGCAGTTAGTGTGAGAACAGCTTACAGTCTTAACAGGGGATTGGCGTGGAGGATTGTAGCCTTCATTTCCTCAGCATTTGCAGCAGTCTTTAGTACATATTGGGACCTCGTTTTTGATTGGGGCCTGCTGCAAAAGCACTCTAAGAATCCTTGGTTGAGAGATAAACTCCTTATTCCTTACAAGAGTGTATATTTTGGAGCTATGGTTCTGAATGTCCTGCTGAGACTTGCCTGGTTACAAACTGTGTTGAATTTCAAGTTGCCTTTCCTACACACTGAAGCCTTAGTTACAATTGTTGCCTGCCTGGAGATTATTCGTCGTGGCATATGGAATTTCTTCAGGTATTTTCATCCATTTAGGCATCAAAGTTTCTAA 2271 0.4232 MKFGKEFKAQMVTEWQEAYMDYHYLKNLLKELQRFKGKNERSPTTSARLQRKLTLVRAFSGLTQRHNHPTTPSPTDVECQDNLVNSVEQGGSGVYEIMSPILKAEEGEIELVYFKRLDEEFNKVVQFYRSKVEEVMNEAALLNKQMDALIAFRVKVRNPQGFMDSSVEMARLSVDVATSTAALSATTPSAARSSRRIFDIGTIEEVEEEISKIEQSDDVEFSVAKDVEKPKTTKQSSQEGKPNSIRASTRPAPLQVLRSVKMNNTLETPRSTIKGCLNVPQCREMNFTRENLEKVQNQLKRAFVEFYHKLRLLKSYSFMNTLAFSKIMKKYDKITSKHASKAFLKKVDDSYLGSSDKVTKLMERVESTFIKHFSNSNRGKGMKILRQKAKKEKHKVTFTLGFFAGCSKERNTCKTCFPLYSFFGFIVLHMLMYAGNIYFWQQYRVNYSFIFGFKQGTQLGYREVFFLSFGLSVLAQASVLSNLDLEMDPKTKSHQAITELVPLALLVLVIAILFCPFNIIYRSSRFFFLTCLFHCICAPLYKVTLPDFFLADQLTSQVQAFRSFEFFLCYYGMGDYRLRQNTCKRNDAYNAFLFIVAAVPYWCRFLQCLRRLFEEKDPMQGYNGLKYFSTVVAVSVRTAYSLNRGLAWRIVAFISSAFAAVFSTYWDLVFDWGLLQKHSKNPWLRDKLLIPYKSVYFGAMVLNVLLRLAWLQTVLNFKLPFLHTEALVTIVACLEIIRRGIWNFFRYFHPFRHQSF* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1112 756 ProSiteProfiles EXS domain profile. 584 756 IPR004342 GO:0016020
Vvi1g1112 756 MobiDBLite consensus disorder prediction 226 252 - -
Vvi1g1112 756 Coils Coil 125 145 - -
Vvi1g1112 756 ProSiteProfiles SPX domain profile. 1 345 IPR004331 -
Vvi1g1112 756 MobiDBLite consensus disorder prediction 236 250 - -
Vvi1g1112 756 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 746 - -
Vvi1g1112 756 CDD SPX_PHO1_like 2 341 IPR034092 -
Vvi1g1112 756 Coils Coil 285 305 - -
Vvi1g1112 756 Pfam EXS family 417 746 IPR004342 GO:0016020
Vvi1g1112 756 Pfam SPX domain 1 347 IPR004331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1112 Vvi-Chr1 14162496 14167180 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1112 - - vvi:100255708 1413.67