Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1111 ATGTCTTCGTCACATTTCACTGCAACGACTGACTCAATTGCTCAGGCTTTAGAAGCAAAAACCCCATCTGAGGCCATCTCTATCCTTTATTGCATTATTGACAGCCCTTCATCTTCTTCTGAGGCCCTACGAATAAAAGAACAGGCCATTACAAATCTCTCAGATCTCCTTAGACAAGAGAACCGAGCAGAGGATCTTCGAAATCTTCTGACCCAATTGAGACCCTTTTTTTCCTTGATCCCTAAGGCAAAAACTGCAAAAATTGTCCGTGGGGTCATTGATGCAGTAGCAAAGATACCAGACACATCAGATCTCCAGATTTCCCTCTGCAAAGACATGGTGGCATGGACCCGTGCAGAGAAGAGAACTTTCCTTAGGCAACGAGTTGAGGCAAGGCTAGCAGCTCTTTTGATGGAAAACAAAGAGTATTCAGAAGCTTTAACTCTTCTCTCAGGTTTAATCAAGGAAGTTAGAAGACTAGATGATAAGCTTCTTCTTGTGGACATAGATTTGTTGGAAAGCAAGCTTCATTTTTCACTAAGAAACCTCCCCAAAGCCAAGGCTGCCCTTACAGCAGCAAGAACTGCAGCCAATGCAATTTATGTACCTCCAGCTCAACAAGGCACTATAGATTTGCAGAGTGGGATTCTCCATGCAGAAGAAAAAGATTATAAAACTGCTTACAGTTATTTCTTTGAAGCGTTTGAAGCTTTCAATGCTCTTGAAGATCCCCGGGCTGTATTTAGCCTGAAGTATATGTTGTTGTGCAAAATCATGGTTAACCAGGCTGATGATGTGGCAGGAATAATATCATCCAAAGCGGGGTTGCAATATGTAGGGCCAGAGTTAGATGCCATGAAAGCTGTGGCTGATGCCCATGCAAAACGCTCGTTGAAGCTTTTTGAGACTGCTCTTCGGGATTTTAGGGCCCAGCTAGAGGAAGACCCAATTGTTCACAGGCACCTTTCTTCCCTTTATGACACCCTATTGGAGCAGAATCTCTGCAGGTTGATTGAACCGTTCTCAAAGGTTGAAATTGCTCATATTGCTGAGCTGATTGAACTGCCAGTAGATCATGTGGAGAAAAAATTGTCGCAGATGATTCTAGATAAGAAATTTGCTGGTACATTAGACCAGGGGGCTGGATGTCTCATCATTTTTGAGGATCCCAAGACAGATGCTATATATCCAGCAACACTGGAAACCATTTCCAATATTGGTAAGGTTGTGGACAGCCTCTATGTGAGATCGGCCAAGATAATGGCTTAA 1269 0.4318 MSSSHFTATTDSIAQALEAKTPSEAISILYCIIDSPSSSSEALRIKEQAITNLSDLLRQENRAEDLRNLLTQLRPFFSLIPKAKTAKIVRGVIDAVAKIPDTSDLQISLCKDMVAWTRAEKRTFLRQRVEARLAALLMENKEYSEALTLLSGLIKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVNQADDVAGIISSKAGLQYVGPELDAMKAVADAHAKRSLKLFETALRDFRAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSKVEIAHIAELIELPVDHVEKKLSQMILDKKFAGTLDQGAGCLIIFEDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1111 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 38 418 - -
Vvi1g1111 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Vvi1g1111 422 Gene3D - 46 421 - -
Vvi1g1111 422 SUPERFAMILY TPR-like 131 321 IPR011990 GO:0005515
Vvi1g1111 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 14 128 IPR040773 -
Vvi1g1111 422 SUPERFAMILY "Winged helix" DNA-binding domain 314 396 IPR036390 -
Vvi1g1111 422 Pfam PCI domain 285 386 IPR000717 -
Vvi1g1111 422 FunFam 26S proteasome non-ATPase regulatory subunit 11 46 421 - -
Vvi1g1111 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 IPR000717 -
Vvi1g1111 422 Coils Coil 126 146 - -
Vvi1g1111 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
Vvi1g1111 422 Coils Coil 46 66 - -
Vvi1g1111 422 SMART PCI/PINT associated module 143 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1111 Vvi-Chr1 14046107 14047375 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1111 K03036 - vvi:100252303 766.918