Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1110 ATGAAGTTTGGGAAGGAGTTCACATCACAAATGGTGCCAGAATGGCAAGAAGCATATATGGATTACAATTTTCTCAAGACCCTTCTAAAAGAAGTGGAGCGTTTCAAGCAAGGAAGCAAGCCACCAGCCACACCCGCTCGGCTAAAGCGAAAGCTAACACTTCATAGAGCTTTCAGTGGCCTAACTCACTTTGCAAGGAATGGCCATCCCACGTGCTCCTCTGAATCTGACATTGAAAGCCAAGCAATTCTCGTCCATTCAGTGGAGCGAAATGGCTTTGCTGGCTATGAAACTACGTTTCTTAAGTTAGGAGAGGAGGGAGCAGAATACGAGCTTGTGTACTTTAGAAGACTTGATGACGAGTTAAATAAAGTTGACAAGTTTTACAGGTCTAAGGTGGAAGAGCTGATGATTGAGGCTGCATCATTGAATAAGCAAATGGATGCTTTAATTGCTTTTCGGGTCAAGGTGGAGAATCCACAAGGTTTGTTTGATAGCTCGGCAGAGATGAATCACCTTTCCATGGATGTTGCAACTTCAGCGGCTGCTACTACTCCATCCAGGGCTAGAGCAAGCAGTAAAGTTCACATGGATGCAATAGAGCAAGAAGGTGGATCGCGTAGCAACCATGGGCAATCAGGTGAATCAAGTGAAGATAAAGAAGTGAAGGAGAAAATCCAAACTACCAACCACAGTATTCAAGAAGAGAAGCCAAATAGCATTAGGGGCACTAGGCCAGCTCCATTACAGATACTTGATCGGGTGAAAATGAACAACACTGTGGAGACTCCTTGTTCCACCATCAAAGGCTTCCTTAATCCTGATCAGCTAACGGCGCTATACTTCACGAGAGAAAATCTGAAAAGGGTTGAGCAAAAACTTAAGAAGGCTTTCATTGAATTTTATCATAAGCTTTGCCTTCTAAAAAGCTATAGCTTCTTGAATAGTTTGGCTTTTTCGAAGATCATGAAGAAATATGATAAGATTGCCTCTAGAAATGCCTCAAAATCTTACTTGAAAATGGTGGATGAATCCTACCTTGGCAGCTCGAACAAGGTTAGCAAGCTAATGGAAAGGGTGGAAGCTACCTTCATCAAGCATTTCTGTAACTCAAACCGTAGTAAAGGGATGAACATCTTGAGACCCAAAGCAAAGAAAGAAAGGCATAGAGTAACATTTTCCCTTGGTTTCTTTGCTGGCTGCACAGTAGCTCTAATATTGTCCCTCATTTTGATTATTTGTACCCGCCATCTCCTTAAACTTAAGGAAGAGGGAGAAAAGTACATGGAAAACATGTTTCCTCTTTACAGCTTGTTTGGGTTCATTGTTCTGCACATGCTCATGTACGCTGGGAATATATACTTCTGGAGGCGATACCGTGTCAATTATTCATTTATATTTGGTTTCAAGCAAGGAACTGAATTGGGCTACCGAGAAGTTCTCTTCCTTGGTTTTGGGGTTGCAGTATTAGCCCTAGCGAGTGTGCTACCAAACCTGGAGCAGACGGACCCAGAAACAGAAGATTACATAGCATTCACTGAACTCCTTCCCCTGGGTTTACTTGTGCTTGTAATTGTCATATTGATCTGCCCTTTGAACATCATATACCGCTCCAGTAGATTCTTCTTTCTTAAATGCTTGTTTCATTGTTTTTGTGCACCTCTCTATAAGGTCACACTCCCAGATTTTCTCGTGGCAGATCAGCTAACTAGCCAGGTGCAAGCATTTAGAAGTTTGGAGTTCTACATTTGCTACTATGGTTGGGGAGACTACAAACATAGACAAAACACCTGTAAAACAAATGTTGTATATAATACTTTCTACTTCATTGTAGCTGTGGTTCCATACTGGTCTCGCCTTCTTCAGTGCCTCAGACGCCTGTTTGAAGAGAAAGATCTGATGCAAGCATATAATGGGGTAAAATATATCTCAACCATAGTAGCCGTTAGTGTGAGGACAGCATACAGTCTTGACAAGGGAATGGGTTGGAGGATAGTCGCCTGGGTTTCCTCTGCAATTGCTGCAATCACTGGAACATACTGGGACCTTGTTTTTGACTGGGGCTTACTCCAAAAGCATGCTAAGAACCGCTGGTTGAGAGACAAACTCCTTGTCCCTCACAAGAGTGTATATTTTGGAGCAACGGTTTTGAATGTCTTGCTGAGATTTGCCTGGTTGCAAACGGTGTTGGATTTCCAGTTGTCTGTCATACATAGAGAAGGCTTAATTGCAATCGTAGCCAGCCTTGAGATTATCCGTCGTGGCATATGGAATTTCTTCAGGTTAGAGAATGAACATTTAAATAATGTTGGCAAGTTCCGAGCATTCAAGTCGGTTCCACTACCTTTCAACTGCGATGAAGATGATGAGAAGGATGGGTAG 2382 0.4257 MKFGKEFTSQMVPEWQEAYMDYNFLKTLLKEVERFKQGSKPPATPARLKRKLTLHRAFSGLTHFARNGHPTCSSESDIESQAILVHSVERNGFAGYETTFLKLGEEGAEYELVYFRRLDDELNKVDKFYRSKVEELMIEAASLNKQMDALIAFRVKVENPQGLFDSSAEMNHLSMDVATSAAATTPSRARASSKVHMDAIEQEGGSRSNHGQSGESSEDKEVKEKIQTTNHSIQEEKPNSIRGTRPAPLQILDRVKMNNTVETPCSTIKGFLNPDQLTALYFTRENLKRVEQKLKKAFIEFYHKLCLLKSYSFLNSLAFSKIMKKYDKIASRNASKSYLKMVDESYLGSSNKVSKLMERVEATFIKHFCNSNRSKGMNILRPKAKKERHRVTFSLGFFAGCTVALILSLILIICTRHLLKLKEEGEKYMENMFPLYSLFGFIVLHMLMYAGNIYFWRRYRVNYSFIFGFKQGTELGYREVLFLGFGVAVLALASVLPNLEQTDPETEDYIAFTELLPLGLLVLVIVILICPLNIIYRSSRFFFLKCLFHCFCAPLYKVTLPDFLVADQLTSQVQAFRSLEFYICYYGWGDYKHRQNTCKTNVVYNTFYFIVAVVPYWSRLLQCLRRLFEEKDLMQAYNGVKYISTIVAVSVRTAYSLDKGMGWRIVAWVSSAIAAITGTYWDLVFDWGLLQKHAKNRWLRDKLLVPHKSVYFGATVLNVLLRFAWLQTVLDFQLSVIHREGLIAIVASLEIIRRGIWNFFRLENEHLNNVGKFRAFKSVPLPFNCDEDDEKDG* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1110 793 MobiDBLite consensus disorder prediction 201 245 - -
Vvi1g1110 793 MobiDBLite consensus disorder prediction 213 231 - -
Vvi1g1110 793 Pfam SPX domain 1 342 IPR004331 -
Vvi1g1110 793 ProSiteProfiles SPX domain profile. 1 340 IPR004331 -
Vvi1g1110 793 CDD SPX_PHO1_like 2 336 IPR034092 -
Vvi1g1110 793 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 789 - -
Vvi1g1110 793 ProSiteProfiles EXS domain profile. 599 793 IPR004342 GO:0016020
Vvi1g1110 793 Pfam EXS family 432 767 IPR004342 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1110 Vvi-Chr1 14039774 14044487 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1110 - - vvi:100254017 1547.33