Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1107 ATGATCATGAATAAGAAGATGATGATTGGTGTAGTAGCAGGGGTGATTCTGAATCTAGGGTTTCTACTAGGGGGCGTCCAATCCATTCGATTTGAACTCGAATCAGGCCACACCAAATGCATTGCCGAAGACATCAAGGCCGATTCCATGACCGTCGGCAAATACTCTGTCGTTAACCCTAACGACGGCTATCCTATTCCCGATTCACATAAAGTCACTGTTCGGGTGACTTCTGCCTATGGCAATAACTATCACTACGCGGATCTTGTTGATTCCGGCCAGTTCGCTTTTCCGGCGGCCGAGGCCGGGGACTATATGGCTTGTTTTTGGGTTGTGTATCACAAGCCGCCCTTGACGTTGACCATTGATTTAGATTGGAAAACGGGAGTGGCCGCCAAGGACTGGTCCAATGTTGCCAAGAAAGGCCAGGTGATGGAATTAGAGCTGAAGAAGTTGTATGACACTGTTACGTCAATTCATGAAGAGATGTTTTATCTTCGAGGAAGGGAAGAAGAAATGCAGGAGCTTAACCAAGCAACTAACTCAAGAATGGCATGGCTGAGTTTTCTTTCACTATTTGTTTGTTTGTCAGTGGCGGGCTTGCAACTATGGCACTTGAAGAACTTTTTTGAGAGGAAGAAACTCCTCTAG 651 0.4624 MIMNKKMMIGVVAGVILNLGFLLGGVQSIRFELESGHTKCIAEDIKADSMTVGKYSVVNPNDGYPIPDSHKVTVRVTSAYGNNYHYADLVDSGQFAFPAAEAGDYMACFWVVYHKPPLTLTIDLDWKTGVAAKDWSNVAKKGQVMELELKKLYDTVTSIHEEMFYLRGREEEMQELNQATNSRMAWLSFLSLFVCLSVAGLQLWHLKNFFERKKLL* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1107 216 ProSiteProfiles GOLD domain profile. 38 151 IPR009038 -
Vvi1g1107 216 SMART EMP24_GP25L_2 28 211 IPR009038 -
Vvi1g1107 216 Pfam emp24/gp25L/p24 family/GOLD 29 211 IPR009038 -
Vvi1g1107 216 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 21 213 IPR015720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1107 Vvi-Chr1 13977001 13980317 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1107 K20352 - vvi:100250632 428.713