Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1103 ATGAGTGAGGTTTTCGAAGGATATGAGCGTCAGTACTGCGAACTTTCCACGAACCTGTCCAGAAAGTGTACCTCAGCAAGCGTTCTTGATGGGGAGGAAAAACATCAGAAGATTTCTGAAATAGAAGCTGGATTGGAAGAAGCTGTCATTTTGATTCGGAAAATGGACCTTGAGGCAAGAAGTTTGCAGGCGGGTGTGAAGGCCATGCTCCTTGCTAAGTTAAGGGAATATAAAGCTGATCTTAATAAGTTGAAAAAGGAAGTCAAAAAAATTACATCTCCTGACACGAATCAGGTTGCTCGTGAAGAGTTGTTGGAGTCTGGTATGGTGGATGCGCATATGGTTTCTGCTGACCAAAAAGGAAGGCTAGCAATGTCCACAGAGAAATTAAATGAGTCAAGTGACAGAATTAAGGAGAGTAGAAGAACCATGCTGGAGACAGAGGATCTTGGTGTCTCTATCCTTCAAGATTTGCATCAACAGCGGCAAACTCTCCTACATGCGCATGAGAAGCTTCATGGTGTCGACAATGCCATTGACAAGAGCAAGAAAATCTTAACTGCCATGTCGAAGAGGATGAGCAGGAACAAATGGATTGTTGGATCAGTAATTTCAGCTCTTGTCCTTGCAATAATTTTCATACTATATTTCAAGCTTTCTTGA 663 0.4223 MSEVFEGYERQYCELSTNLSRKCTSASVLDGEEKHQKISEIEAGLEEAVILIRKMDLEARSLQAGVKAMLLAKLREYKADLNKLKKEVKKITSPDTNQVAREELLESGMVDAHMVSADQKGRLAMSTEKLNESSDRIKESRRTMLETEDLGVSILQDLHQQRQTLLHAHEKLHGVDNAIDKSKKILTAMSKRMSRNKWIVGSVISALVLAIIFILYFKLS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1103 220 Coils Coil 67 87 - -
Vvi1g1103 220 Gene3D - 117 197 - -
Vvi1g1103 220 PIRSF Membrin-2 1 218 IPR027027 GO:0005484|GO:0005794|GO:0016192
Vvi1g1103 220 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 216 - -
Vvi1g1103 220 Pfam Snare region anchored in the vesicle membrane C-terminus 128 193 - -
Vvi1g1103 220 Pfam Vesicle transport v-SNARE protein N-terminus 12 90 IPR007705 GO:0006886|GO:0016020
Vvi1g1103 220 SUPERFAMILY SNARE fusion complex 130 189 - -
Vvi1g1103 220 CDD SNARE_Vti1 127 187 - -
Vvi1g1103 220 FunFam Vesicle transport through interaction with t-SNAREsB 117 197 - -
Vvi1g1103 220 Gene3D - 1 98 IPR038407 -
Vvi1g1103 220 SUPERFAMILY t-snare proteins 6 92 IPR010989 GO:0016020|GO:0016192
Vvi1g1103 220 FunFam Vesicle transport through interaction with t-SNAREs homolog 1A 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1103 Vvi-Chr1 13887532 13910385 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1103 K08493 - vvi:100259152 419.853