Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1083 ATGAAGCCAAGGAATGATGAAACCTACACGAAGATAGCACTAACCTCGCTCTCGGCCATGGTCGCCGAGACCTCCACCTTTCCTATAGACCTCACCAAGACTAGACTCCAGCTCCACGGCGAGTCACTCTCTTCCGCTCGCTCCACCACCGCGTTTAGGGTTGCTGCCGAAATCGTTCGGAGAGATGGCCCACTCGGCCTCTACAAAGGCCTGTCTCCCGCAATTCTTCGGCACCTATTCTACACGCCGATCCGAATCGTCGGGTACGAACACCTGAGAAATGCTGTGGATGGCCATGATTCGGTATCTCTGTCGGGAAAGGCCCTAGTCGGAGGAATCTCCGGCGTCATTGCTCAGGTAGTGGCAAGCCCTGCTGATCTTGTCAAGGTGAGGATGCAAGCAGATGGTCGAATGGTGAGCCAAGGCCTCCAATCCAGGTACTCAGGAACTTTTGATGCATTAAACAAGATTATCCGTACAGAAGGCTTTCGAGGCCTATGGAAGGGGGTTTTCCCAAATGTCCAGAGGGCATTTTTAGTGAACATGGGAGAATTAGCCTGCTATGATCATGCAAAACATTTTGTTATACAAAACCAGATATGTGGTGACAACATATATTCCCACACCCTAGCCTCTATCATGTCAGGCCTTTCAGCAACTGCTTTAAGTTGTCCAGCGGATGTGGTTAAGACACGAATGATGAATCAGGCTGTGAGCCAGGAGGGCAAGAGTATGTATAATAACTCTTATGATTGTCTCGTGAAAACTGTCAGAGTTGAAGGATTAAGGGCTCTTTGGAAGGGATTCTTTCCTACATGGGCAAGGCTTGGTCCATGGCAGTTTGTGTTCTGGGTTTCTTATGAAAAGTTTCGGGAGCTTGCGGGGCTCTCATCCTTCTGA 900 0.4956 MKPRNDETYTKIALTSLSAMVAETSTFPIDLTKTRLQLHGESLSSARSTTAFRVAAEIVRRDGPLGLYKGLSPAILRHLFYTPIRIVGYEHLRNAVDGHDSVSLSGKALVGGISGVIAQVVASPADLVKVRMQADGRMVSQGLQSRYSGTFDALNKIIRTEGFRGLWKGVFPNVQRAFLVNMGELACYDHAKHFVIQNQICGDNIYSHTLASIMSGLSATALSCPADVVKTRMMNQAVSQEGKSMYNNSYDCLVKTVRVEGLRALWKGFFPTWARLGPWQFVFWVSYEKFRELAGLSSF* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1083 299 PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED 10 292 - -
Vvi1g1083 299 PRINTS Mitochondrial carrier protein signature 117 135 IPR002067 GO:0055085
Vvi1g1083 299 PRINTS Mitochondrial carrier protein signature 24 38 IPR002067 GO:0055085
Vvi1g1083 299 PRINTS Mitochondrial carrier protein signature 212 234 IPR002067 GO:0055085
Vvi1g1083 299 PRINTS Mitochondrial carrier protein signature 11 24 IPR002067 GO:0055085
Vvi1g1083 299 ProSiteProfiles Solute carrier (Solcar) repeat profile. 102 194 IPR018108 -
Vvi1g1083 299 FunFam mitochondrial uncoupling protein 3 10 296 - -
Vvi1g1083 299 SUPERFAMILY Mitochondrial carrier 10 289 IPR023395 -
Vvi1g1083 299 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 95 IPR018108 -
Vvi1g1083 299 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 293 IPR018108 -
Vvi1g1083 299 Pfam Mitochondrial carrier protein 102 198 IPR018108 -
Vvi1g1083 299 Pfam Mitochondrial carrier protein 205 294 IPR018108 -
Vvi1g1083 299 Pfam Mitochondrial carrier protein 9 95 IPR018108 -
Vvi1g1083 299 Gene3D Mitochondrial carrier domain 10 295 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1083 Vvi-Chr1 12603683 12606601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1083 13 292 Miscellaneous Gene Families AT3G54110 36.237 3.60e-62 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1083 K15112 - vvi:100263686 598.201