Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1080 ATGTTTCCCTCTCGGGGAAGCAATACATATGGACAGCAACCATATGCTGCACAATCTGGATATGGACAAAATCTGGGATCTGCTTATTCTGGAAGTTCCATTGGAGGACCTGATGGGGGTACTCAACTTTCCGTGGCTTCTCGGCATTCGTCAATGTTAGGTGGTTCTCAAGAAGCCGAAATTGGTGGATATAGAGCTCATCCCTCAGCTGCTGGTCATTATGGGGGACAATATAGTTCTTTGTATAGCTCTGCTTTGAGCAGTTCTCAACAGGTTCCAGCAAGTGCCAAAGGAGTGGGACCATCAACTTTGGAATCTCGCAGTGGCTATGCATCAGCTATGCCTGAGTCACCTAAGTTTACTTCAAGTGACTTTGTCTCATCATCAACACATGGATATGGTCAAAAAGGTGATCAGTTTTTTTCAGAGAAGCTTTCTGATTATCCATCTATGGAGAGGCGGCAATATGGTGAGCGACAGAGTGCCTATGTAGGAGGGAGGGAATTGCAGAGTGAATCAAGTGGACGCTATGCTGATCCTGTTGGGTTTAGTCATCAACATCAGCCTGAGATTTATGATCGTGTTGATCAGGCATCACTTCTTCGACAAGAACAAATGCTTAAAGCTCAATCACTGCAATCTACTTCTCTTGATGGGGGTGCCAGACAAACTGATTATCTTGCAGCAAGGAGTGCAACTATTCGTCATTCAACCCAAGATCTTATGCCATATAGTGGAAGATTGGATGGTGATCCTCGCAATCTATCGATGCTTAGTGGTTCTTCATATGGTGCACAACATGCACCCTCTATTTTGGGGGCTGCTCCACGAAGAAATGTGGACGATCTCATGTATGCTCAAAGTTCTTCAAATCCAGGTTATGGAGTGAGCCTTCCTCCAGGTAGGGACTATGCCACAGGAAAGGGACTTCATGGCACATCTCTTGAGCCTGATTTTCTATCACGTGGTGGTCATACAAGGATCAATGAGCGTAAAGATGACAGGGGTGCATATGTTCGAGAGCTTGAGCTAAGGGAGGAGGAACGGCGTAGAGAGCATTTTCGTGAGAGAGAGAAAGACAGAGAAAGGGAAAAAGAACGAGAACGTGAACGAGAAAGGGAAAGAGAAAGAGAAAGGGAAAGGGAAAAGGAAAGGGAAAGAGAACGTGAAAGGAAACGCATTTTCGAACGGCGGGAAAAGGAGAGAGAACGAGAGCGCAAACGTGCAGCTGAAGTTAAGCGTGAACGAACTCCACTAAGGATCTCTAAGGACCGCCGTGGATCCTCTTTGGTGAAGGATGAAAGATCAATACGACGAGAATCTCCACGTCATGAAGCATTGCATAGGCGTCATACACCTGTTAAAGAAAAACGGAGAGAATATGCCTGCAAGGTTTACTCATCCAGTTTGGTAGATATTGAGAGGGACTATTTGTCCATGGATAAGCGTTATCCCAAACTTTTCATATCTCCAGAGTTCTCTAAGGTTGTTGTGAACTGGCCCAAGGGAAACCTTCAACTTTCTTTCAATACTCCTGTCAGTTTTGAGCATGATTTTGTTGAAGAAGAGAGTTCCCCTGAACAGAAAGAGGTATCTACCAAGCAGTTGGCTGAAGAACCTGTAGAATCAAAACAAGGAAGTACAGTGTGGAATGCAAAGATGATCTTGATGAGTGGACTCAGCAGGAATGCTCTGGAGGATCTGTCATCTGAAAAAAGCCATGATGACCGCATACCTCATATTTGCAATATCCTTAGGTTTGCTGTTCTTAAAAAGGACCGTTCATTTATGGCAATTGGAGGCCCATGGGATGTTGCTGATGGAGGAGATCCTTCAGTTGATGATGACTCATTGGTTCAAACAATTCTTAGATATGCAAAGGATGTGACTCAACTTGATTTGGAGAACTGCCAGAATTGGAACCGTTTCCTTGAGATACACTATGATAGAATTGGCGAGGATGGATTCTTTAGCCATAAAGAGGTCACTGTACTGTTTGTTCCTGATTTATCAGGGTGTCTCCCTTCATTAGATACATGGCGAGACCAATGGCTTGCACACAAGAAGGCTGTTGCTGAGAGAACGTGCCAACTTTCTTTGAAAAGAGAGAAATCTAAAGAGAAGAAGGAAGGGCTGAAAGATAAGGAAATTGATTCTACAAAAGCAGTTAAACAAGTAGACAAATCAGCAAAAACAAAAGATTCTGCATCCTCTGGACAGGCAGATGTTAACAAAAAAGAGAAAAATGGGAGTCAACCAAAAGGTGATGAAGCTGATAAAGAAGGCAATGGAAATAGTGATAAAAATGTTGTGAAAAAAGATGTGGTTGAAATGAGTCAGGATGGCAAAACTATAGAGAAAAAGGAATCAGGAGGAACTGCTGGTTCTCAGACATCAGGCAATGCAAAATCTGGGAAGAAGAAACTTGTAAAAAAGGTTGTAAAACAGAAGGTTGCTGATAAGAAAGCTGGTACAGAGAACACAGAAAATGAAGAAAATGATAAGCTGGATGACAAGGATGTAGGGGAGAAGAATGCAAAATTGGAAACCAAAAGCCAACAGCAGGAACCTTCTGCTGATCCCGGTGTCAAAACTTTTATAAGGAAAAAAGTTGGGAAAAAGGTCACGGAGGGCAAAACCACTCAGGATGAAAGCGTGCAACCTGAGGTAAAAATTGAGAATGAGGCACAATGTTCTGAAGATAAAAGTGAGATTAAGTCAGATCCAAGCATTGCTGCTTCAGTGCAAGGGACTGGTGTGAAAACAACTATAAAGAAGAAAATCATCAAGAGAATACCCAAAAGAAAGGTCACTGGAGTAGGGACCAATATTGCGTCTGCTGAAAGCAAAAAAGATGATGATAATGATGAGAAAAAGGTAGTTCAACAAGGGACTGAAACCAAAGATGTGTCAGAGCAAAAAGTAGAAGCAGGCAACCCAGTTTGTGAGCCTAAGATATTAGAGAAGAAAATGACACCTAAAACAAAGTCAAAAACAGCAACCTTCAGCAAGCAAGATGAGAAAACTGGCTCTGGGACTAAAGTTGAAATTAAGTCAAAAACAGCAAACTTCAGCAAGCAAGATGAGAAAATTGTCTCTGGAACCAAAGTTGAAATTGAGGCTGAGAAGCAAAAAGTTCCTCAGAAGGATAGTCAGAATGGCAACAGAGACAAATCAAAAGATCAAGAAAAGTTAAAAGATGAAAAAGAGAAAAAAGAGAAAGATGGGAAATATGATTCTCGGGGCAACAAACCTGATAAAGAGGCAAAAGAGAAGAAAAATCTTGAAGAGCCTCCAAGGCACCCTGGATTGCTTCTACAGACAAAATGGAGCAAGGACTCTAAACTGCGTTCATTGTCCCTTTCACTGGATTCGCTCTTGGGTTACACTGACAAAGATATTGAGGAACCAACATTCGAGCTTTCATTATTTGCTGAAACACTATATGAAATGCTTCAGTATCAAATGGGTTGTCGTCTTTTAACATTTCTCCAGAAACTGCGTATAAAATTTGTGATGAAAAGAAATCAACGGAAAAGACAATGGGAAGAAACCTCAGAGAAGGGCAGTGACAAAAGATCATCAACAAAGCGTCAAAAGATTGCCGAGCCCTCCATGGGAATGAAATCTACTGAATCTGAAATGCTGGATGCAGCTCATCCAAATGATGAAAAACCTGCAACCAAGGGCAAGAGTACATCTGTTGATGTGGTAAAATTAGAAAAGCCAAAAGAGGAAGGGGTTGAACCAGAAAGGCTGGAAGATGAAGGGGTAGAAATGGAAAAACTAGATGATGAAACCGATTACGATGAAGATCCAGAGGAGGATCCCGAGGAGGAGCCAATGGAAGATGAGGAAATGCAGGATGCAAACCCTCAAGATGAGAATAATGAAGAGCTAAATATACAGAATAATGAAGGGGAGGCAAAGGCCAGTGGGGATACTGAGCCTGAAAAAGTGGCAGGGATGGGAAAGGAAGAAGCTGAGGAATTTGGTAAGGAGAAAACTAACAATAAAACTTCAGGAACAAATGAAGGGACAAATCTTGGAGAAGAGAGGAAAGAAGCTCCTATCATTAATAAGGTGGCTGTTGACAAGGAGCTGCTGCAGGCTTTCAGGTTTTTTGACCGGAACCGAGTGGGCTACATTAGGGTGGAAGATATGAGGTTGATTGTTCACAACCTTGGGAACTTCCTGTCTCACAGGGATGTAAAGGAACTTGTGCAAAGTGCACTCTTAGAGAGCAACACTGGAAGGGATGATCGCATTCTTTACAATAAGCTGGTGAGAATGTCCAACATTTGA 4305 0.4232 MFPSRGSNTYGQQPYAAQSGYGQNLGSAYSGSSIGGPDGGTQLSVASRHSSMLGGSQEAEIGGYRAHPSAAGHYGGQYSSLYSSALSSSQQVPASAKGVGPSTLESRSGYASAMPESPKFTSSDFVSSSTHGYGQKGDQFFSEKLSDYPSMERRQYGERQSAYVGGRELQSESSGRYADPVGFSHQHQPEIYDRVDQASLLRQEQMLKAQSLQSTSLDGGARQTDYLAARSATIRHSTQDLMPYSGRLDGDPRNLSMLSGSSYGAQHAPSILGAAPRRNVDDLMYAQSSSNPGYGVSLPPGRDYATGKGLHGTSLEPDFLSRGGHTRINERKDDRGAYVRELELREEERRREHFREREKDREREKEREREREREREREREREKERERERERKRIFERREKERERERKRAAEVKRERTPLRISKDRRGSSLVKDERSIRRESPRHEALHRRHTPVKEKRREYACKVYSSSLVDIERDYLSMDKRYPKLFISPEFSKVVVNWPKGNLQLSFNTPVSFEHDFVEEESSPEQKEVSTKQLAEEPVESKQGSTVWNAKMILMSGLSRNALEDLSSEKSHDDRIPHICNILRFAVLKKDRSFMAIGGPWDVADGGDPSVDDDSLVQTILRYAKDVTQLDLENCQNWNRFLEIHYDRIGEDGFFSHKEVTVLFVPDLSGCLPSLDTWRDQWLAHKKAVAERTCQLSLKREKSKEKKEGLKDKEIDSTKAVKQVDKSAKTKDSASSGQADVNKKEKNGSQPKGDEADKEGNGNSDKNVVKKDVVEMSQDGKTIEKKESGGTAGSQTSGNAKSGKKKLVKKVVKQKVADKKAGTENTENEENDKLDDKDVGEKNAKLETKSQQQEPSADPGVKTFIRKKVGKKVTEGKTTQDESVQPEVKIENEAQCSEDKSEIKSDPSIAASVQGTGVKTTIKKKIIKRIPKRKVTGVGTNIASAESKKDDDNDEKKVVQQGTETKDVSEQKVEAGNPVCEPKILEKKMTPKTKSKTATFSKQDEKTGSGTKVEIKSKTANFSKQDEKIVSGTKVEIEAEKQKVPQKDSQNGNRDKSKDQEKLKDEKEKKEKDGKYDSRGNKPDKEAKEKKNLEEPPRHPGLLLQTKWSKDSKLRSLSLSLDSLLGYTDKDIEEPTFELSLFAETLYEMLQYQMGCRLLTFLQKLRIKFVMKRNQRKRQWEETSEKGSDKRSSTKRQKIAEPSMGMKSTESEMLDAAHPNDEKPATKGKSTSVDVVKLEKPKEEGVEPERLEDEGVEMEKLDDETDYDEDPEEDPEEEPMEDEEMQDANPQDENNEELNIQNNEGEAKASGDTEPEKVAGMGKEEAEEFGKEKTNNKTSGTNEGTNLGEERKEAPIINKVAVDKELLQAFRFFDRNRVGYIRVEDMRLIVHNLGNFLSHRDVKELVQSALLESNTGRDDRILYNKLVRMSNI* 1435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 1216 1257 - -
Vvi1g1080 1434 Pfam BURAN domain 473 559 IPR045354 -
Vvi1g1080 1434 Gene3D - 1364 1433 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 406 449 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 90 176 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 987 1014 - -
Vvi1g1080 1434 FunFam ATP/GTP-binding protein family 1364 1432 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 406 453 - -
Vvi1g1080 1434 Pfam DBC1 580 695 IPR025954 -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 1178 1353 - -
Vvi1g1080 1434 Pfam LAIKA domain 1099 1164 IPR045353 -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 1021 1099 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 90 136 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 349 383 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 747 788 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 938 1108 - -
Vvi1g1080 1434 Coils Coil 344 393 - -
Vvi1g1080 1434 PANTHER CELL DIVISION CYCLE AND APOPTOSIS REGULATOR PROTEIN 12 854 IPR025224 GO:0006355
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 1294 1310 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 947 973 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 732 746 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 1311 1336 - -
Vvi1g1080 1434 ProSiteProfiles EF-hand calcium-binding domain profile. 1363 1398 IPR002048 GO:0005509
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 1258 1293 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 866 907 - -
Vvi1g1080 1434 SMART DBC1_2 578 703 IPR025954 -
Vvi1g1080 1434 Coils Coil 395 415 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 702 918 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 521 545 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 702 731 - -
Vvi1g1080 1434 Coils Coil 1055 1075 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 790 804 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 290 332 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 816 850 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 26 69 - -
Vvi1g1080 1434 SUPERFAMILY EF-hand 1366 1411 IPR011992 -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 26 54 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 1178 1199 - -
Vvi1g1080 1434 MobiDBLite consensus disorder prediction 521 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1080 Vvi-Chr1 12480755 12504384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1080 409 716 EF-hand Containing Proteins AT2G03150 59.621 1.04e-112 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1080 K25827 - vvi:100260241 1822.75