Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1076 ATGAGCAGCTTCACGAGCCCCACCTCTCTGTCTTGTGCTCAGCTGACCACCGCCCAACACGGTCGCAGCCCCTCACTTCCGGCCACCCGGGCATCATTATCCGGTGAAGAAACTCCAATTCTCCGCCGCAGAATTGTCTCCACATTGCTGGCAACGTCACTCGCACTTCATGGCACCCCCCTGGCACTAGCAGAGAACTGGGGCACGCGCTCGTTTCTCAAGGAACGGTTCTTTGAGCCGGGGCTGTCGCCGGAGGATGCGGTGGCGAGGATCCGCCAAACAGCTGAAGGACTCCACAGCATTAGGCACATGCTGGAGACGATGTCTTGGAGGTATGTCATATTTTACATTCGCCTCAAGTCGGCGTATCTCTCCCAGGACTTGAAAAATGCGATGACGACGTTGCCGGAGAGTCGCCGGAGGTCTTACGCGAATAAGGCTAATGAGTTGGTAGACAACATGGCCGAGTTTGATTATTATGTCCGCACCCCAAAAGTGTACGAATCGTATCTATATTACGAGAAGACCTTGAAATCCATAGATGATCTTGTGGCAATGTTGGCATAA 567 0.5344 MSSFTSPTSLSCAQLTTAQHGRSPSLPATRASLSGEETPILRRRIVSTLLATSLALHGTPLALAENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIRLKSAYLSQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDLVAMLA* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1076 188 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC 17 187 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Vvi1g1076 188 FunFam Photosynthetic NDH subunit of lumenal location 2, chloroplastic 46 187 - -
Vvi1g1076 188 Gene3D - 46 188 IPR023222 -
Vvi1g1076 188 SUPERFAMILY Oxygen-evolving enhancer protein 3, 77 188 IPR023222 -
Vvi1g1076 188 Pfam Oxygen evolving enhancer protein 3 (PsbQ) 64 188 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1076 K08901 - vvi:100243071 371.318