Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1073 ATGGCGGGCCAGAGAAATGACTATGGCAAGAGATCCCATTCTCAGTCTGACTATGGTGGTAATGGCGGAAGTAAGAGAAGAAACCCTGGAGATGACAAGGAGCAGCATGGTATTGGGGTAGAAGATACTGTATACCGTTACCTGTGCCCTGTGAGAAAGATTGGAAGCATCATTGGTAGGGGTGGAGACATTGCAAAACAACTAAGATCTGAAACTAAATCAAACATTAGGATTGGGGAAACTATGCCAGGCTGTGAGGAACGTGTTGTCACCATCTATAGTTCAAGTGAGGAAACTAATCCATTTGGTGATACCGGTGAGCTTGTTTCACCTGCACAAGATGCTCTCTTCAGGGTGCATGATAGGATTGTTGCTGGTGAGCTGCCTGCTGATGAGGAACCTGAAGAGGCACAGCAAGTTACTGTTCGGATGCTTGTGCCTTCTGATCAGATTGGTTGTGTTATTGGGAAAGGTGGGCAAGTGATTCAGAATATACGCAGTGAAACTCGTGCTCAGATTCGCATTCTAAAAGATGAACATCTGCCACCTTGTGCCCTTAGTTCTGATGAGCTTCTGCAGATAATTGGGGACGCATCAGTTGTGAGAAAGGCTCTTCATCAACTAGCATCTCGCCTTCATGAGAATCCATCACGATCCCAGCACCTGCTGTTGTCTTCTTCCCCCAACATGTATCAATCTGGTGGAGATTGGTCGCACTCTTATTACTCTGCTCGGAGGGATGAATCTTCTGCAAAGGAATTCTCTCTTCGTTTGGTTTGTCCAACTGGAAATATTGGAGGTGTGATTGGCAAAGGTGGCGGTATTATCAAACAAATCAGACAGGAATCTGGGGCTTCCATTAAAGTTGATAGTTCAAGTGCTGAAGGAGATGATTGTATTATTTTTATATCAGCAAAGGAGTTCTTCGAAGATCCATCTCCAACCATTGATGCAGCACTGCGGTTGCAACCACGATGCAGTGAGAAAGCTGAAAGGGAATCTAGTGATTCTGTGGTCACTACCCGTCTACTCGTTCCAAGCTCACGGATTGGATGCCTTATTGGTAAAGGTGGGGCCATCATTTCTGAGATGAGGAGTGTTACAAGAGCAAACATCCGCATTCTATCAAAGGAAAATCTTCCCAAGGTTGCATCTGAAGATGATGAGATGGTGCAGATCACTGGAGAGCTAAATGTTGCTAGCAATGCCCTTTTACAAGTGACATTGCGGTTAAAAGCTAATTTATTTGAAAGGGAGGGTGCAATAGCTGCAATTCCACCAACCCTTCCCTACCTTCCCATGTCAGACATGTCAGATGGTTCAAAATATGGAAGCCGTGATAGTCAACCGCGTGAACGTGGGTTTTCTTCTTATTCAGGTGGATATGGTTCTAGTGATTTGGCCCCAAGTGACAGATATGGGAGCTATGGTGGTTCACAGAGTGGTGGTGGGAATGGTTATGGAGCATATAGTGGCTATTCTTCCAGTCGATCGGGTAGCACTGGGTTATCTAGTCAGGGCCGTGTTTCCCATGGGAAACATCATGGTTATTAG 1554 0.455 MAGQRNDYGKRSHSQSDYGGNGGSKRRNPGDDKEQHGIGVEDTVYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGCEERVVTIYSSSEETNPFGDTGELVSPAQDALFRVHDRIVAGELPADEEPEEAQQVTVRMLVPSDQIGCVIGKGGQVIQNIRSETRAQIRILKDEHLPPCALSSDELLQIIGDASVVRKALHQLASRLHENPSRSQHLLLSSSPNMYQSGGDWSHSYYSARRDESSAKEFSLRLVCPTGNIGGVIGKGGGIIKQIRQESGASIKVDSSSAEGDDCIIFISAKEFFEDPSPTIDAALRLQPRCSEKAERESSDSVVTTRLLVPSSRIGCLIGKGGAIISEMRSVTRANIRILSKENLPKVASEDDEMVQITGELNVASNALLQVTLRLKANLFEREGAIAAIPPTLPYLPMSDMSDGSKYGSRDSQPRERGFSSYSGGYGSSDLAPSDRYGSYGGSQSGGGNGYGAYSGYSSSRSGSTGLSSQGRVSHGKHHGY* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1073 517 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 333 411 IPR036612 GO:0003723
Vvi1g1073 517 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 31 233 - -
Vvi1g1073 517 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 245 305 IPR036612 GO:0003723
Vvi1g1073 517 FunFam KH domain-containing protein 253 417 - -
Vvi1g1073 517 CDD KH-I_PEPPER_rpt2_like 340 411 - -
Vvi1g1073 517 ProSiteProfiles Type-1 KH domain profile. 338 407 - -
Vvi1g1073 517 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 133 216 IPR036612 GO:0003723
Vvi1g1073 517 ProSiteProfiles Type-1 KH domain profile. 139 208 - -
Vvi1g1073 517 Pfam KH domain 141 208 IPR004088 GO:0003723
Vvi1g1073 517 Pfam KH domain 340 400 IPR004088 GO:0003723
Vvi1g1073 517 Pfam KH domain 45 97 IPR004088 GO:0003723
Vvi1g1073 517 Pfam KH domain 256 305 IPR004088 GO:0003723
Vvi1g1073 517 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 42 97 IPR036612 GO:0003723
Vvi1g1073 517 MobiDBLite consensus disorder prediction 474 508 - -
Vvi1g1073 517 CDD KH-I_PEPPER_rpt1_like 42 117 - -
Vvi1g1073 517 ProSiteProfiles Type-1 KH domain profile. 253 323 - -
Vvi1g1073 517 FunFam KH domain-containing protein 42 218 - -
Vvi1g1073 517 MobiDBLite consensus disorder prediction 1 38 - -
Vvi1g1073 517 CDD KH-I_PEPPER_rpt2_like 141 212 - -
Vvi1g1073 517 Gene3D - 253 414 - -
Vvi1g1073 517 Gene3D - 41 220 - -
Vvi1g1073 517 MobiDBLite consensus disorder prediction 434 517 - -
Vvi1g1073 517 ProSiteProfiles Type-1 KH domain profile. 42 116 - -
Vvi1g1073 517 SMART kh_6 337 412 IPR004087 GO:0003676
Vvi1g1073 517 SMART kh_6 138 213 IPR004087 GO:0003676
Vvi1g1073 517 SMART kh_6 252 324 IPR004087 GO:0003676
Vvi1g1073 517 SMART kh_6 41 124 IPR004087 GO:0003676
Vvi1g1073 517 MobiDBLite consensus disorder prediction 450 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1073 Vvi-Chr1 12389409 12392723 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1073 K21444 - vvi:100265365 946.806