Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1070 ATGGGCGTCTTGGACGAGGGGCACGTGGAGGTGGGATTTGAGCAAGAGACTCTAACCATTGAGGAGGCTGTTAAAGTGCTTTTGCAGGGTTTGGGTGAGGATATCAATAGGGAAGGCCTGAGCAAGACTCCTGCCCGTGTTGCCAAGGCCCTTCGTGAAGGAACTAGAGGTTACAGACAAAAGGCAAAGGACATTGTTCAAGGTGCCTTATTCCCTGAAGCTGGTTTGAATAATGGAATTGGTCATGCAGGAGGAGTGGGTGGGCTTGTGATTGTTCGGGATCTTGATCTCTTCTCATACTGCGAATCTTGTTTGCTTCCATTCCAGGTTAAGTGTCATGTGGGTTATGTCCCATCAGGGCAATGCGTTGTGGGCTTAAGCAAGCTTTCTCGGGTAGCTGATGTTTTTGCAAAACGACTCCAAGATCCACAGCGTCTTGCAGATGATGTGTGTTCTGCTTTGAACCATGGGATCAAGCCCGCAGGTGTTGCTGTTGTACTCCAGTGTTTACATATTCATTTCCCAAATTTAGAATTGGGCTTTCTTGATTCAACCCATCAAGAATGGGTAACAGTATCAGTTTGTTCTGGTAAAGGCCTTTTTGAAAATGCAAAGGCCACCATTTGGAGTGATTTTTTAAGTCTCCTGAAATTCCGAGGCATAAATGTGGAGAAAACCTGTACCAGAGATTCCACAGGTCCATGTTGGTGCCCATCCCAGTCTTCCTCTGCTTTGATTCCATGCAAGATAGAAACAGTCCACCAAATGGTTACTGCAGTAACTTCAATTCTGAGGTCTTTGGGTGAAGACCCATTAAGGAAAGGGCTGGTAGGAACCCCTAATCGTTATGTGACGTGGCTGCTGAACTTTGAGAAAACTAACAAGGAGCTGAAATTAGATGGCTATGTTTGTGGTAAAATGGATCCTTTTCAACCCAATTGCAACGAGGAAGAGATGCATTCTGAGCTGAACTTGGCATTCTGGTCTCAATGTGAGCATCATTTACTTCCCTTTCACGGTGTTGTGCATATAGGCTACTTCTGCACCAAAGGGACCAATCCCATTGCAAAATCCATTTTACAGTCAATAGTACATTTCTATGGCTTCAAGCTTCAGGTACAGGAAAGAATTACCAGGCAAGTTGCTGAGACTGTTTCATCTCTGTTAGGTGGGGATGTGATAGTGGTGGTGGAAGCTAGTCACTCTTGTATGGTATCCAGAGGAATTGAGAAGTTAGGAAGTAATACTGCTACAATGGCTCTGCTTGGCCGATTTTCAACTGACGATACTGCAAAGACCATGTTTTTGCAGAGAATTCAAAACACTCCAACTTCTTGA 1338 0.4477 MGVLDEGHVEVGFEQETLTIEEAVKVLLQGLGEDINREGLSKTPARVAKALREGTRGYRQKAKDIVQGALFPEAGLNNGIGHAGGVGGLVIVRDLDLFSYCESCLLPFQVKCHVGYVPSGQCVVGLSKLSRVADVFAKRLQDPQRLADDVCSALNHGIKPAGVAVVLQCLHIHFPNLELGFLDSTHQEWVTVSVCSGKGLFENAKATIWSDFLSLLKFRGINVEKTCTRDSTGPCWCPSQSSSALIPCKIETVHQMVTAVTSILRSLGEDPLRKGLVGTPNRYVTWLLNFEKTNKELKLDGYVCGKMDPFQPNCNEEEMHSELNLAFWSQCEHHLLPFHGVVHIGYFCTKGTNPIAKSILQSIVHFYGFKLQVQERITRQVAETVSSLLGGDVIVVVEASHSCMVSRGIEKLGSNTATMALLGRFSTDDTAKTMFLQRIQNTPTS* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1070 445 Gene3D - 17 66 IPR043134 -
Vvi1g1070 445 FunFam GTP cyclohydrolase 1 310 441 - -
Vvi1g1070 445 Pfam GTP cyclohydrolase I 258 439 IPR020602 -
Vvi1g1070 445 Pfam GTP cyclohydrolase I 20 172 IPR020602 -
Vvi1g1070 445 Gene3D - 249 297 IPR043134 -
Vvi1g1070 445 SUPERFAMILY Tetrahydrobiopterin biosynthesis enzymes-like 253 440 - -
Vvi1g1070 445 PANTHER GTP CYCLOHYDROLASE I 15 172 IPR001474 GO:0003934|GO:0046654
Vvi1g1070 445 Gene3D - 309 442 IPR043133 -
Vvi1g1070 445 Gene3D - 83 219 IPR043133 -
Vvi1g1070 445 FunFam GTP cyclohydrolase 1 84 219 - -
Vvi1g1070 445 SUPERFAMILY Tetrahydrobiopterin biosynthesis enzymes-like 14 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1070 Vvi-Chr1 12284702 12288702 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1070 K01495 - vvi:100263593 887.871