Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1066 ATGGAGAAGACACCAACAAACACCACTTCAGCTGGGCTCCTATTAGTGTTCAAAATCAATATATGTTTCTGGCTCTTCCAGCTTTTCATCCAACCCCTAGTCAACTTTGCGTCCACTGGATGGAAGGTTTGGACCAAGGCAAAAAGCCCGGATCCTGATCCAGTGCTCGGCCCGCAGCATGACACAGGGCATAATAGGAAACTAAAAGGAGGAGAGTTGAAGATGGTAATGGACAGATTGGGAGTTACTTACCACTCTGATGGAGAGATGCTTGAGGAGGGACTTGTTGCAGATGAGCTTCCACAACTGTTTGAGGAGGAGCCCAGCTTGGAGGAGGTGAAGAAGGCGTTCGATGTGTTTGATGAGAACAAAGACGGTTTCATAGAGGCGACTGAGTTACAGAGGGTTCTATGCTCCTTGGGCCTCAAGGAAGGATCACAAGTAGAGGACTGCAGAAGGATGATCAAAGCTTTTGATGAAGATGACGATGGGCAAATTGATTTTAAAGAGTTTGTCAAGTTTCTGGATAAAAGTTTTTCTTAG 543 0.4586 MEKTPTNTTSAGLLLVFKINICFWLFQLFIQPLVNFASTGWKVWTKAKSPDPDPVLGPQHDTGHNRKLKGGELKMVMDRLGVTYHSDGEMLEEGLVADELPQLFEEEPSLEEVKKAFDVFDENKDGFIEATELQRVLCSLGLKEGSQVEDCRRMIKAFDEDDDGQIDFKEFVKFLDKSFS* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1066 180 CDD EFh 112 175 IPR002048 GO:0005509
Vvi1g1066 180 ProSiteProfiles EF-hand calcium-binding domain profile. 108 143 IPR002048 GO:0005509
Vvi1g1066 180 SUPERFAMILY EF-hand 60 175 IPR011992 -
Vvi1g1066 180 FunFam Probable calcium-binding protein CML46 85 179 - -
Vvi1g1066 180 ProSitePatterns EF-hand calcium-binding domain. 159 171 IPR018247 -
Vvi1g1066 180 Gene3D - 95 179 - -
Vvi1g1066 180 ProSiteProfiles EF-hand calcium-binding domain profile. 146 180 IPR002048 GO:0005509
Vvi1g1066 180 Pfam EF-hand domain pair 111 174 IPR002048 GO:0005509
Vvi1g1066 180 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 99 176 - -
Vvi1g1066 180 SMART efh_1 150 178 IPR002048 GO:0005509
Vvi1g1066 180 SMART efh_1 112 140 IPR002048 GO:0005509
Vvi1g1066 180 ProSitePatterns EF-hand calcium-binding domain. 121 133 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1066 Vvi-Chr1 12220359 12220901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1066 12 179 EF-hand Containing Proteins AT3G29000 42.308 9.80e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1066 K02183 - vvi:100248178 370.933