Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1060 ATGAAGAAATGGTATGGTGGTGGTTTGATTGCATCCTTGTTTATGTTGCTGGTTCTGAGGTATGTTTTCATGAAAAATCCTATAAGTGACAGTTACCTTACAAGTCCATTCTCCTCCAATTCAACTAATCCCCTTGAATGGATAAATGCTGGAGTTCTACCAGTAGTTCAAAATCCAGAGAATGCTTCACAAGTGATTTCTGCTGATAGTATAGTTTCCAGTCTCTTTGGTCTGAGGAACATCTCTGATGAAGAGCAGCAATCTTTGCACACATGGGACCATTTGAAATACTTAATTAATCATGCTCAGGTTTTACCTAATGCATTAGAGGCTATTAAGGAAGCGGGAATTGCATGGACTAGCCTTTTGGCTTCGGTTGAAGAGGAAAAACTGGGGTATACTAATGAAAGTTCAGTTAAGAGAGCGAAAGAGAAACAATGTCCTTATTTCCTTAATAAAATGAATGCCACAGAACTTGGTAGTAATGGCTATAAGTTGGGGGTTCCTTGTGGGTTGACTCAAGGTTCCTCCATTACAATTATTGGCATTCCAGATGGTCTTCTTGGTAATTTTCGGATTGACTTAACAGGCGAACCACTTCCAGGGGAGCCTGATCCACCCATTATTTTGCACTACAATGTTAGGCTTCATGGTGATAAGATAACTGAAGACCCTGTAATTGTCCAAAATACCTGGACTATAGCTCATGATTGGGGTGAAGAGGAACGTTGTCCATCTCCTGCTCCAGACAAGAATAAGAAAGTGGATGAGTTGGATCAGTGCAATGAGATAGTGGGTAAAGATGATAAGCGGGTTCTCATGGCTAATTACTATTCCAATGGTTCAAGGCGGCTTCCAATGGTTCAGGAAGCATCCAAAACCAGAAAATATTTTCCCTTTAAGCAAGGCTATCACTTTGTGTCAACATTTAGAGTGGGATCAGAGGGAATCCAAATGACGGTTGATGGAAAGCACATAACATCCTTTGCTTACCGAGAAAGTTTGGAGCCATGGCTCGTTAGTGAAGTTAGGATGTCTGGGGACCTGAACTTAATATCAGTCTTGGCCAGTGGTTTACCCACATCAGAAGATTTAGATCATATAATTGATTTAGAAGCACTTAAATCAGTTCCTCTCCTTCCTGAAAAACGGTTGGAGCTCTTCATCGGTGTTTTCTCTACGGCCAACAATTTTAAACGCAGGATGGCTGTTCGGAGAACGTGGATGCAGTATGCTGCAGTGCGGTCAGGGGCAGTTGCTGTGCGCTTTTTTGTTGGTTTGCATAAAAATAAAATGGTGAATGAGGAACTCTGGAATGAGGCACGGACATATGGAGATACACAGTTAATGCCTTTTGTTGACTACTATAGCATCATCACTTGGAAGGCTTTAGCCATCTGCATCTTTGGGACGGAGGTTGTTTCGGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTTCGTGTGGATGAAGTGTTAGCTTCTTTAAACAGGATAAATGTGTCACATGGGTTGCTTTATGGTCTTATCAACTCAGATTCCCGACCTCATAGGAATACAGAAAGCAAGTGGTATATTAGCCCCGAGGAATGGCCTGAAGAGACCTATCCTCCCTGGGCACATGGTCCTGGTTATGTTGTGTCACATGACATAGCAAAGCAAGTCTACAAGAGATACAAAAAAGGTCGTTTAAAGATGTTTAAGCTTGAAGATGTGGCGATGGGCATCTGGATTGCAGATATGAAGAAGGGAGGTATGGAAGTTTGGTATGAGAAGGAAGAAAGGGTCTATAATGAAGGGTGTAAGGATGGTTATGTTGTTGCTCACTACCAAGCTCCCAGGGAGATGCTGTGTCTATGGCAGAAACTTCAAGAAAAAAAACGAGCTCAATGTTGTGGCGAACCATAG 1911 0.4202 MKKWYGGGLIASLFMLLVLRYVFMKNPISDSYLTSPFSSNSTNPLEWINAGVLPVVQNPENASQVISADSIVSSLFGLRNISDEEQQSLHTWDHLKYLINHAQVLPNALEAIKEAGIAWTSLLASVEEEKLGYTNESSVKRAKEKQCPYFLNKMNATELGSNGYKLGVPCGLTQGSSITIIGIPDGLLGNFRIDLTGEPLPGEPDPPIILHYNVRLHGDKITEDPVIVQNTWTIAHDWGEEERCPSPAPDKNKKVDELDQCNEIVGKDDKRVLMANYYSNGSRRLPMVQEASKTRKYFPFKQGYHFVSTFRVGSEGIQMTVDGKHITSFAYRESLEPWLVSEVRMSGDLNLISVLASGLPTSEDLDHIIDLEALKSVPLLPEKRLELFIGVFSTANNFKRRMAVRRTWMQYAAVRSGAVAVRFFVGLHKNKMVNEELWNEARTYGDTQLMPFVDYYSIITWKALAICIFGTEVVSAKFVMKTDDDAFVRVDEVLASLNRINVSHGLLYGLINSDSRPHRNTESKWYISPEEWPEETYPPWAHGPGYVVSHDIAKQVYKRYKKGRLKMFKLEDVAMGIWIADMKKGGMEVWYEKEERVYNEGCKDGYVVAHYQAPREMLCLWQKLQEKKRAQCCGEP* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1060 636 Gene3D - 161 355 - -
Vvi1g1060 636 FunFam Beta-1,3-galactosyltransferase GALT1 378 607 - -
Vvi1g1060 636 SMART Gal_bind_lectin_2 168 356 IPR001079 GO:0030246
Vvi1g1060 636 Pfam Galactoside-binding lectin 165 355 IPR001079 GO:0030246
Vvi1g1060 636 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 323 587 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vvi1g1060 636 SMART galectin_3 162 357 IPR001079 GO:0030246
Vvi1g1060 636 Pfam Galactosyltransferase 399 583 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vvi1g1060 636 Gene3D - 382 593 - -
Vvi1g1060 636 SUPERFAMILY Concanavalin A-like lectins/glucanases 164 357 IPR013320 -
Vvi1g1060 636 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 164 357 IPR001079 GO:0030246
Vvi1g1060 636 CDD GLECT 163 354 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1060 Vvi-Chr1 12148351 12156503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1060 1 635 Glycosyltransferase AT1G26810 64.486 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1060 K14413 - vvi:100244775 1298.11