Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1059 ATGAAGTCCAACCAATCATTCTTCATCAAGCTTTTGATAATACAATGCCTCACAGTTGTGTGCTTTTCACAGGATTTTGATTTCTTTTACCTTGTTCAACAATGGCCAGGATCCTACTGTGACAGTAAGCAAAGTTGCTGCTATCCAACGACGGGGAAGCCTGACGCAGATTTCGGAATTCATGGGCTCTGGCCCAATTACAGGGATGGCTCCTACCCCTCCAACTGCGATTCCAATAACCCTTATGATGAATCCGAGATCTCAGACCTCATCAGATCCATGCAAGAGGAATGGCCAACACTGGCCTGCCCTAGCGGCAACGGCTCCAAGTTCTGGGCACATGAATGGGACAAACATGGAACCTGCTCGGAGTCGGTCCTCAGCCAGTACCAGTACTTTGAAGCAGCTCTAGACCTGAAGAAAGATGTAGACCTCGTCCAAATTCTTAAGAAAGCAGGAATCCGAGCGAACGGAGAGTCATACCCCTTATACGACATTAAAGATGCTATAAAAGATGCAGTTGGAGTCACACCGTGGATAGAATGCAATGTGGATTCATCAGGCAACAGTCAGCTATACCAGGTTTACCTTTGCGTCGACACTTCTGGGAAAAATATCATCGAATGTCCAGTCATGCCCAGGGGGAAATGTGGTTCCAGAATTGAATTTCCCGCATTCTAG 681 0.4684 MKSNQSFFIKLLIIQCLTVVCFSQDFDFFYLVQQWPGSYCDSKQSCCYPTTGKPDADFGIHGLWPNYRDGSYPSNCDSNNPYDESEISDLIRSMQEEWPTLACPSGNGSKFWAHEWDKHGTCSESVLSQYQYFEAALDLKKDVDLVQILKKAGIRANGESYPLYDIKDAIKDAVGVTPWIECNVDSSGNSQLYQVYLCVDTSGKNIIECPVMPRGKCGSRIEFPAF* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1059 226 FunFam Ribonuclease 3 20 226 - -
Vvi1g1059 226 SUPERFAMILY Ribonuclease Rh-like 20 224 IPR036430 GO:0003723|GO:0033897
Vvi1g1059 226 CDD RNase_T2_euk 26 223 IPR033697 -
Vvi1g1059 226 PANTHER RIBONUCLEASE T2 22 219 IPR001568 GO:0003723|GO:0033897
Vvi1g1059 226 ProSitePatterns Ribonuclease T2 family histidine active site 2. 111 122 IPR033130 -
Vvi1g1059 226 ProSitePatterns Ribonuclease T2 family histidine active site 1. 58 65 IPR018188 GO:0003723|GO:0033897
Vvi1g1059 226 Gene3D - 19 226 IPR036430 GO:0003723|GO:0033897
Vvi1g1059 226 Pfam Ribonuclease T2 family 26 209 IPR001568 GO:0003723|GO:0033897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1059 Vvi-Chr1 12137509 12138761 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1059 K01166 - vvi:100249919 487.263